miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4343 5' -55.8 NC_001720.1 + 8922 0.67 0.551674
Target:  5'- aGGCu-GCCGCGGcUUUGGAGAGuuuGGCCc -3'
miRNA:   3'- cUCGucCGGCGCC-AGACUUCUU---CUGG- -5'
4343 5' -55.8 NC_001720.1 + 11049 0.66 0.607028
Target:  5'- -cGCGGGgCagGCGGUCUac-GAAGGCCc -3'
miRNA:   3'- cuCGUCCgG--CGCCAGAcuuCUUCUGG- -5'
4343 5' -55.8 NC_001720.1 + 19032 0.68 0.497944
Target:  5'- cAGcCAGuaCGCGGUCUGGuucAGAgacugAGACCc -3'
miRNA:   3'- cUC-GUCcgGCGCCAGACU---UCU-----UCUGG- -5'
4343 5' -55.8 NC_001720.1 + 22144 1.12 0.000376
Target:  5'- gGAGCAGGCCGCGGUCUGAAGAAGACCg -3'
miRNA:   3'- -CUCGUCCGGCGCCAGACUUCUUCUGG- -5'
4343 5' -55.8 NC_001720.1 + 24563 0.66 0.62939
Target:  5'- cGGCGGGCacgcgGCGGUC-GggGuuaAAGACg -3'
miRNA:   3'- cUCGUCCGg----CGCCAGaCuuC---UUCUGg -5'
4343 5' -55.8 NC_001720.1 + 30555 0.66 0.595876
Target:  5'- cGGGCAagauGGcCCGCgcgGGUCcgGGAGAacuGGACCu -3'
miRNA:   3'- -CUCGU----CC-GGCG---CCAGa-CUUCU---UCUGG- -5'
4343 5' -55.8 NC_001720.1 + 32024 0.68 0.48539
Target:  5'- cAGCAGGCUaccauuccuaauuGCGGUgucgcgcUUGggGGAGGCg -3'
miRNA:   3'- cUCGUCCGG-------------CGCCA-------GACuuCUUCUGg -5'
4343 5' -55.8 NC_001720.1 + 32585 0.69 0.407866
Target:  5'- -uGCAGGuaGgGGaUCcggUGAAGGAGACCg -3'
miRNA:   3'- cuCGUCCggCgCC-AG---ACUUCUUCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.