miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
4344	5'	-59.6	NC_001720.1	+	22488	1.07	0.000377
	Target:  5'- uCCCUCAUCCCCACGCGCACGGCAGUUg -3' miRNA:   3'- -GGGAGUAGGGGUGCGCGUGCCGUCAA- -5'
4344	5'	-59.6	NC_001720.1	+	9588	0.69	0.253674
	Target:  5'- cCCCagcUgGUCuCCCGCGCcgaacgcuuaGCACGGCAGg- -3' miRNA:   3'- -GGG---AgUAG-GGGUGCG----------CGUGCCGUCaa -5'
4344	5'	-59.6	NC_001720.1	+	10799	0.69	0.273749
	Target:  5'- uCCCaugaGUCCCgCGuCGCGCGCGGuCAGg- -3' miRNA:   3'- -GGGag--UAGGG-GU-GCGCGUGCC-GUCaa -5'
4344	5'	-59.6	NC_001720.1	+	12319	0.68	0.325495
	Target:  5'- gCCU-AUCCCgGCGCGggcgcgacaccCACGGCAGg- -3' miRNA:   3'- gGGAgUAGGGgUGCGC-----------GUGCCGUCaa -5'
4344	5'	-59.6	NC_001720.1	+	27956	0.66	0.393099
	Target:  5'- gCCCUCGcUCgUCAccCGCGCGCGGUAc-- -3' miRNA:   3'- -GGGAGU-AGgGGU--GCGCGUGCCGUcaa -5'
4344	5'	-59.6	NC_001720.1	+	11116	0.66	0.411367
	Target:  5'- gCCUUCGUagaccgccugCCCCGCGUcaCGCGGCGGc- -3' miRNA:   3'- -GGGAGUA----------GGGGUGCGc-GUGCCGUCaa -5'
4344	5'	-59.6	NC_001720.1	+	10271	0.66	0.420696
	Target:  5'- aCCUCGUCgCgCCGC-CGCuucgaugucuucGCGGCGGUg -3' miRNA:   3'- gGGAGUAG-G-GGUGcGCG------------UGCCGUCAa -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home