miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4345 3' -55.2 NC_001720.1 + 20674 1.08 0.000899
Target:  5'- cCGAGGCGCGACUCGCAAGAAGGUCAGc -3'
miRNA:   3'- -GCUCCGCGCUGAGCGUUCUUCCAGUC- -5'
4345 3' -55.2 NC_001720.1 + 14842 0.72 0.315782
Target:  5'- gGAGGCGCGACgguggcCGUgaccGAGAuaccgucgGGGUCAGc -3'
miRNA:   3'- gCUCCGCGCUGa-----GCG----UUCU--------UCCAGUC- -5'
4345 3' -55.2 NC_001720.1 + 32200 0.71 0.374614
Target:  5'- gGAGcGgGUGGCUUGCAAGAAGG-CGu -3'
miRNA:   3'- gCUC-CgCGCUGAGCGUUCUUCCaGUc -5'
4345 3' -55.2 NC_001720.1 + 17231 0.67 0.57757
Target:  5'- cCGAGGCG-GACg-GCGAGguGGUgGGa -3'
miRNA:   3'- -GCUCCGCgCUGagCGUUCuuCCAgUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.