miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4345 5' -54.8 NC_001720.1 + 23091 1.13 0.000568
Target:  5'- uCCCCAUCCCCCGUAAGGCGAGUUACCc -3'
miRNA:   3'- -GGGGUAGGGGGCAUUCCGCUCAAUGG- -5'
4345 5' -54.8 NC_001720.1 + 15214 0.71 0.417282
Target:  5'- -aUCAUCgCCgGaUAAGGCGAGggACCa -3'
miRNA:   3'- ggGGUAGgGGgC-AUUCCGCUCaaUGG- -5'
4345 5' -54.8 NC_001720.1 + 28065 0.7 0.470217
Target:  5'- aCCCCugaaCCCCGguuuuguauucuggcUGAGGCGAcggUACCg -3'
miRNA:   3'- -GGGGuag-GGGGC---------------AUUCCGCUca-AUGG- -5'
4345 5' -54.8 NC_001720.1 + 28489 0.68 0.582652
Target:  5'- uUCCGUCCaCCCGUA-GGCGGcaucACCc -3'
miRNA:   3'- gGGGUAGG-GGGCAUuCCGCUcaa-UGG- -5'
4345 5' -54.8 NC_001720.1 + 21318 0.67 0.637829
Target:  5'- cCCUCAUCCCCaCGcgcacGGC-AGUUGCg -3'
miRNA:   3'- -GGGGUAGGGG-GCauu--CCGcUCAAUGg -5'
4345 5' -54.8 NC_001720.1 + 35636 0.66 0.692861
Target:  5'- cUCCCAUCUgcuCCCG-GAGGgGAGgcagACUg -3'
miRNA:   3'- -GGGGUAGG---GGGCaUUCCgCUCaa--UGG- -5'
4345 5' -54.8 NC_001720.1 + 15316 0.66 0.714537
Target:  5'- gCCCGUCUCCgG--GGGUGAGgcugacGCCc -3'
miRNA:   3'- gGGGUAGGGGgCauUCCGCUCaa----UGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.