miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4346 5' -50.6 NC_001720.1 + 36323 0.66 0.859445
Target:  5'- aGAcAGAGGA-GGAGAGU-AGAGCg-- -3'
miRNA:   3'- aCU-UCUCCUcCCUCUCGuUCUUGaaa -5'
4346 5' -50.6 NC_001720.1 + 32796 0.66 0.831691
Target:  5'- aGAAGAGGAGGaAGA---AGAGCUg- -3'
miRNA:   3'- aCUUCUCCUCCcUCUcguUCUUGAaa -5'
4346 5' -50.6 NC_001720.1 + 18108 0.66 0.831691
Target:  5'- --cAGAGGAgGGGAGGGCucu-GCUUg -3'
miRNA:   3'- acuUCUCCU-CCCUCUCGuucuUGAAa -5'
4346 5' -50.6 NC_001720.1 + 17181 0.66 0.821942
Target:  5'- gGggGaAGGAGGGGuuccucGAGCGAGuauGCg-- -3'
miRNA:   3'- aCuuC-UCCUCCCU------CUCGUUCu--UGaaa -5'
4346 5' -50.6 NC_001720.1 + 7478 0.68 0.747985
Target:  5'- aGuAGGGGGGGGGGGGGCucccAGAAa--- -3'
miRNA:   3'- aC-UUCUCCUCCCUCUCGu---UCUUgaaa -5'
4346 5' -50.6 NC_001720.1 + 9850 0.68 0.736767
Target:  5'- aUGAGcauGGGGGGaAGGGCGGGAugUUc -3'
miRNA:   3'- -ACUUcu-CCUCCC-UCUCGUUCUugAAa -5'
4346 5' -50.6 NC_001720.1 + 26468 0.71 0.538487
Target:  5'- gGAGGAGGAGGaucuguucGAGGGCAacaaggAGAACa-- -3'
miRNA:   3'- aCUUCUCCUCC--------CUCUCGU------UCUUGaaa -5'
4346 5' -50.6 NC_001720.1 + 8508 0.72 0.527071
Target:  5'- cGggGAcGGAGGGAGGGCAuGucGCa-- -3'
miRNA:   3'- aCuuCU-CCUCCCUCUCGUuCu-UGaaa -5'
4346 5' -50.6 NC_001720.1 + 9266 0.73 0.45013
Target:  5'- gGGAGAGGGGGGAG-GUggguuucucgAAGAGCUc- -3'
miRNA:   3'- aCUUCUCCUCCCUCuCG----------UUCUUGAaa -5'
4346 5' -50.6 NC_001720.1 + 28248 0.74 0.389372
Target:  5'- gGAGGAGGAGGcGGGGGCGgcggcaguGGAACc-- -3'
miRNA:   3'- aCUUCUCCUCC-CUCUCGU--------UCUUGaaa -5'
4346 5' -50.6 NC_001720.1 + 20499 1.05 0.003184
Target:  5'- cUGAAGAGGAGGGAGAGCAAGAACUUUu -3'
miRNA:   3'- -ACUUCUCCUCCCUCUCGUUCUUGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.