Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4348 | 3' | -54.2 | NC_001720.1 | + | 21155 | 0.66 | 0.737889 |
Target: 5'- uCUAUG-CACCUGCGGCAccGCUuccUGGg -3' miRNA: 3'- -GGUGCgGUGGACGUCGU--CGAuuuGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 14443 | 0.66 | 0.716224 |
Target: 5'- aCugGCgGCCUcCGGCAGgcCUAuauACGGg -3' miRNA: 3'- gGugCGgUGGAcGUCGUC--GAUu--UGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 22672 | 0.66 | 0.694212 |
Target: 5'- -aGCGUUGCCUGUGGCgaaaGGCgu-ACGGa -3' miRNA: 3'- ggUGCGGUGGACGUCG----UCGauuUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 14308 | 0.66 | 0.694212 |
Target: 5'- gCAC-CCGCCUGgAGUGGC---GCGGc -3' miRNA: 3'- gGUGcGGUGGACgUCGUCGauuUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 17086 | 0.67 | 0.676417 |
Target: 5'- aCCGCGaCCGCUUccgaGCGcGCGGCUcugacgaaccuagccAGACGGc -3' miRNA: 3'- -GGUGC-GGUGGA----CGU-CGUCGA---------------UUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 39933 | 0.67 | 0.660753 |
Target: 5'- --cUGCCACCUGCAG--GCUGAAUa- -3' miRNA: 3'- gguGCGGUGGACGUCguCGAUUUGcc -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 36426 | 0.67 | 0.660753 |
Target: 5'- gCCACGCaaauCGCCUGCuuCGuGCUGGGCuGGu -3' miRNA: 3'- -GGUGCG----GUGGACGucGU-CGAUUUG-CC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 18078 | 0.67 | 0.64953 |
Target: 5'- -aAgGCCAgCUGCAGCAGaUAGACc- -3' miRNA: 3'- ggUgCGGUgGACGUCGUCgAUUUGcc -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 12648 | 0.67 | 0.637165 |
Target: 5'- gCGCGCgGCCgaGUugaagagGGCGGCUGAGCa- -3' miRNA: 3'- gGUGCGgUGGa-CG-------UCGUCGAUUUGcc -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 26218 | 0.68 | 0.620297 |
Target: 5'- -aGCGCCugCUGgAGCuguacGGCUugccccggacuaccaAGACGGg -3' miRNA: 3'- ggUGCGGugGACgUCG-----UCGA---------------UUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 33457 | 0.68 | 0.615802 |
Target: 5'- gCCGCGaagaCAUCgaaGCGGCGGCgcGACGa -3' miRNA: 3'- -GGUGCg---GUGGa--CGUCGUCGauUUGCc -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 16288 | 0.68 | 0.593374 |
Target: 5'- aCCAUuagGCCGCCUGC--CAGCUGuACGc -3' miRNA: 3'- -GGUG---CGGUGGACGucGUCGAUuUGCc -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 21358 | 0.68 | 0.582206 |
Target: 5'- uCCgACGCCGCCaagGCGGuCAGCgcGAUGc -3' miRNA: 3'- -GG-UGCGGUGGa--CGUC-GUCGauUUGCc -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 25789 | 0.69 | 0.538054 |
Target: 5'- cCgGCGCCGCg-GguGCGGC-GGGCGGc -3' miRNA: 3'- -GgUGCGGUGgaCguCGUCGaUUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 21619 | 0.69 | 0.538054 |
Target: 5'- aCCAUGguguUCACCUGCugcaacccgcaGGCGGCgucGGGCGGa -3' miRNA: 3'- -GGUGC----GGUGGACG-----------UCGUCGa--UUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 16591 | 0.7 | 0.475256 |
Target: 5'- aCCAuCGCCACCgUGCaaccgcgcguuuugAGCAGUUcaacccugcagugagGAGCGGa -3' miRNA: 3'- -GGU-GCGGUGG-ACG--------------UCGUCGA---------------UUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 12707 | 0.72 | 0.386296 |
Target: 5'- cCUACGCCGgCUGCuguGaCGGC-GAGCGGa -3' miRNA: 3'- -GGUGCGGUgGACGu--C-GUCGaUUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 9669 | 0.72 | 0.380825 |
Target: 5'- gCAUGUCAUaaacgucugacgaugCUGCAGCAGCguGACGGu -3' miRNA: 3'- gGUGCGGUG---------------GACGUCGUCGauUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 32708 | 0.73 | 0.302071 |
Target: 5'- cCCGCGUCAC--GCGGCGGC--GACGGa -3' miRNA: 3'- -GGUGCGGUGgaCGUCGUCGauUUGCC- -5' |
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4348 | 3' | -54.2 | NC_001720.1 | + | 10276 | 0.74 | 0.282626 |
Target: 5'- gUCGCGCCGCCgcuucgaugucuucGCGGCGGU--GGCGGa -3' miRNA: 3'- -GGUGCGGUGGa-------------CGUCGUCGauUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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