miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4348 3' -54.2 NC_001720.1 + 21155 0.66 0.737889
Target:  5'- uCUAUG-CACCUGCGGCAccGCUuccUGGg -3'
miRNA:   3'- -GGUGCgGUGGACGUCGU--CGAuuuGCC- -5'
4348 3' -54.2 NC_001720.1 + 14443 0.66 0.716224
Target:  5'- aCugGCgGCCUcCGGCAGgcCUAuauACGGg -3'
miRNA:   3'- gGugCGgUGGAcGUCGUC--GAUu--UGCC- -5'
4348 3' -54.2 NC_001720.1 + 22672 0.66 0.694212
Target:  5'- -aGCGUUGCCUGUGGCgaaaGGCgu-ACGGa -3'
miRNA:   3'- ggUGCGGUGGACGUCG----UCGauuUGCC- -5'
4348 3' -54.2 NC_001720.1 + 14308 0.66 0.694212
Target:  5'- gCAC-CCGCCUGgAGUGGC---GCGGc -3'
miRNA:   3'- gGUGcGGUGGACgUCGUCGauuUGCC- -5'
4348 3' -54.2 NC_001720.1 + 17086 0.67 0.676417
Target:  5'- aCCGCGaCCGCUUccgaGCGcGCGGCUcugacgaaccuagccAGACGGc -3'
miRNA:   3'- -GGUGC-GGUGGA----CGU-CGUCGA---------------UUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 39933 0.67 0.660753
Target:  5'- --cUGCCACCUGCAG--GCUGAAUa- -3'
miRNA:   3'- gguGCGGUGGACGUCguCGAUUUGcc -5'
4348 3' -54.2 NC_001720.1 + 36426 0.67 0.660753
Target:  5'- gCCACGCaaauCGCCUGCuuCGuGCUGGGCuGGu -3'
miRNA:   3'- -GGUGCG----GUGGACGucGU-CGAUUUG-CC- -5'
4348 3' -54.2 NC_001720.1 + 18078 0.67 0.64953
Target:  5'- -aAgGCCAgCUGCAGCAGaUAGACc- -3'
miRNA:   3'- ggUgCGGUgGACGUCGUCgAUUUGcc -5'
4348 3' -54.2 NC_001720.1 + 12648 0.67 0.637165
Target:  5'- gCGCGCgGCCgaGUugaagagGGCGGCUGAGCa- -3'
miRNA:   3'- gGUGCGgUGGa-CG-------UCGUCGAUUUGcc -5'
4348 3' -54.2 NC_001720.1 + 26218 0.68 0.620297
Target:  5'- -aGCGCCugCUGgAGCuguacGGCUugccccggacuaccaAGACGGg -3'
miRNA:   3'- ggUGCGGugGACgUCG-----UCGA---------------UUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 33457 0.68 0.615802
Target:  5'- gCCGCGaagaCAUCgaaGCGGCGGCgcGACGa -3'
miRNA:   3'- -GGUGCg---GUGGa--CGUCGUCGauUUGCc -5'
4348 3' -54.2 NC_001720.1 + 16288 0.68 0.593374
Target:  5'- aCCAUuagGCCGCCUGC--CAGCUGuACGc -3'
miRNA:   3'- -GGUG---CGGUGGACGucGUCGAUuUGCc -5'
4348 3' -54.2 NC_001720.1 + 21358 0.68 0.582206
Target:  5'- uCCgACGCCGCCaagGCGGuCAGCgcGAUGc -3'
miRNA:   3'- -GG-UGCGGUGGa--CGUC-GUCGauUUGCc -5'
4348 3' -54.2 NC_001720.1 + 25789 0.69 0.538054
Target:  5'- cCgGCGCCGCg-GguGCGGC-GGGCGGc -3'
miRNA:   3'- -GgUGCGGUGgaCguCGUCGaUUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 21619 0.69 0.538054
Target:  5'- aCCAUGguguUCACCUGCugcaacccgcaGGCGGCgucGGGCGGa -3'
miRNA:   3'- -GGUGC----GGUGGACG-----------UCGUCGa--UUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 16591 0.7 0.475256
Target:  5'- aCCAuCGCCACCgUGCaaccgcgcguuuugAGCAGUUcaacccugcagugagGAGCGGa -3'
miRNA:   3'- -GGU-GCGGUGG-ACG--------------UCGUCGA---------------UUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 12707 0.72 0.386296
Target:  5'- cCUACGCCGgCUGCuguGaCGGC-GAGCGGa -3'
miRNA:   3'- -GGUGCGGUgGACGu--C-GUCGaUUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 9669 0.72 0.380825
Target:  5'- gCAUGUCAUaaacgucugacgaugCUGCAGCAGCguGACGGu -3'
miRNA:   3'- gGUGCGGUG---------------GACGUCGUCGauUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 32708 0.73 0.302071
Target:  5'- cCCGCGUCAC--GCGGCGGC--GACGGa -3'
miRNA:   3'- -GGUGCGGUGgaCGUCGUCGauUUGCC- -5'
4348 3' -54.2 NC_001720.1 + 10276 0.74 0.282626
Target:  5'- gUCGCGCCGCCgcuucgaugucuucGCGGCGGU--GGCGGa -3'
miRNA:   3'- -GGUGCGGUGGa-------------CGUCGUCGauUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.