miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4350 3' -49 NC_001720.1 + 16875 0.66 0.940602
Target:  5'- uGCUGCGGCACCGgaucUUGGc------ -3'
miRNA:   3'- -CGACGUCGUGGCaau-AGCCcuaauuc -5'
4350 3' -49 NC_001720.1 + 15705 0.66 0.923147
Target:  5'- aGCUGUaccugcaggaggGGCGCCaaaacaauGUgcucaagagcgaUAUCGGGGUUAAGu -3'
miRNA:   3'- -CGACG------------UCGUGG--------CA------------AUAGCCCUAAUUC- -5'
4350 3' -49 NC_001720.1 + 31508 0.66 0.923147
Target:  5'- uGCUGCGGUugCuGUUGaUGGGGUc--- -3'
miRNA:   3'- -CGACGUCGugG-CAAUaGCCCUAauuc -5'
4350 3' -49 NC_001720.1 + 32492 0.67 0.919317
Target:  5'- uGCUGCAGCACCGgucucuugcaauUCGaaauaccaaGGGUUGc- -3'
miRNA:   3'- -CGACGUCGUGGCaau---------AGC---------CCUAAUuc -5'
4350 3' -49 NC_001720.1 + 28321 0.67 0.902872
Target:  5'- uCUGUGGCgGCCGUUGaCGGGucUAAGu -3'
miRNA:   3'- cGACGUCG-UGGCAAUaGCCCuaAUUC- -5'
4350 3' -49 NC_001720.1 + 34145 0.67 0.887818
Target:  5'- uGCUGCAGCACCGUUucaCGuaaagAAGc -3'
miRNA:   3'- -CGACGUCGUGGCAAua-GCccuaaUUC- -5'
4350 3' -49 NC_001720.1 + 19243 0.68 0.871579
Target:  5'- --gGCgGGCACgCGgcgGUCGGGGUUAAa -3'
miRNA:   3'- cgaCG-UCGUG-GCaa-UAGCCCUAAUUc -5'
4350 3' -49 NC_001720.1 + 11728 0.68 0.863033
Target:  5'- -aUGCAGCgACCG--AUCGGGAa---- -3'
miRNA:   3'- cgACGUCG-UGGCaaUAGCCCUaauuc -5'
4350 3' -49 NC_001720.1 + 33978 0.7 0.753342
Target:  5'- uGCUGCAGCACCGUUcacgcaaaaGUCccGGAc---- -3'
miRNA:   3'- -CGACGUCGUGGCAA---------UAGc-CCUaauuc -5'
4350 3' -49 NC_001720.1 + 9775 0.72 0.66661
Target:  5'- uGCUGCAGCAUCGUucggacuuuuucgcgUGguggUGGGGuUUGAGa -3'
miRNA:   3'- -CGACGUCGUGGCA---------------AUa---GCCCU-AAUUC- -5'
4350 3' -49 NC_001720.1 + 25443 0.75 0.489387
Target:  5'- aCUGCAGCcgcggcgucGCCGUggucagGUCGGGAgUAAGc -3'
miRNA:   3'- cGACGUCG---------UGGCAa-----UAGCCCUaAUUC- -5'
4350 3' -49 NC_001720.1 + 9710 1.13 0.001839
Target:  5'- uGCUGCAGCACCGUUAUCGGGAUUAAGg -3'
miRNA:   3'- -CGACGUCGUGGCAAUAGCCCUAAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.