miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4350 5' -50.5 NC_001720.1 + 19975 0.66 0.861141
Target:  5'- cGACUUgcGCGcGGACGGcGC-GCAGa -3'
miRNA:   3'- -CUGAAaaCGCaCUUGCCaCGaCGUCg -5'
4350 5' -50.5 NC_001720.1 + 11370 0.67 0.843191
Target:  5'- cGACga--GCagauccUGGagAUGGUGCUGCAGCa -3'
miRNA:   3'- -CUGaaaaCGc-----ACU--UGCCACGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 12714 0.68 0.783708
Target:  5'- cGGCUgcUGUGacggcGAGCGGacCUGCAGCa -3'
miRNA:   3'- -CUGAaaACGCa----CUUGCCacGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 26852 0.68 0.783708
Target:  5'- aGGCUg-UGCGUcugcgccaaGAucCGGUGCcGCAGCa -3'
miRNA:   3'- -CUGAaaACGCA---------CUu-GCCACGaCGUCG- -5'
4350 5' -50.5 NC_001720.1 + 34033 0.68 0.783708
Target:  5'- -------cCGauAACGGUGCUGCAGCa -3'
miRNA:   3'- cugaaaacGCacUUGCCACGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 32345 0.71 0.5902
Target:  5'- uGGCg---GCGcu-GCuGGUGCUGCAGCa -3'
miRNA:   3'- -CUGaaaaCGCacuUG-CCACGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 8687 0.71 0.625181
Target:  5'- aGCUUUUGgGUGAcGCGGacguccUGCaUGCAGUa -3'
miRNA:   3'- cUGAAAACgCACU-UGCC------ACG-ACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 11246 0.73 0.510405
Target:  5'- ----aUUGCaaGAGacCGGUGCUGCAGCa -3'
miRNA:   3'- cugaaAACGcaCUU--GCCACGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 9588 0.82 0.148194
Target:  5'- aGCUucUUUaCGUGaAACGGUGCUGCAGCa -3'
miRNA:   3'- cUGA--AAAcGCAC-UUGCCACGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 9691 0.85 0.091963
Target:  5'- uGCUgcagcaGCGUG-ACGGUGCUGCAGCa -3'
miRNA:   3'- cUGAaaa---CGCACuUGCCACGACGUCG- -5'
4350 5' -50.5 NC_001720.1 + 9757 1.13 0.001058
Target:  5'- gGACUUUUGCGUGAACGGUGCUGCAGCa -3'
miRNA:   3'- -CUGAAAACGCACUUGCCACGACGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.