miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4352 3' -60.1 NC_001720.1 + 32699 0.66 0.429921
Target:  5'- aCCGCCUGccCCGCGUCaCGcGGCGGc -3'
miRNA:   3'- -GGCGGGUuuGGUGCGGgGUuCCGCCa -5'
4352 3' -60.1 NC_001720.1 + 35449 0.66 0.429921
Target:  5'- uCCGCCCucacccaccCCAUGCCCCA---CGGa -3'
miRNA:   3'- -GGCGGGuuu------GGUGCGGGGUuccGCCa -5'
4352 3' -60.1 NC_001720.1 + 29421 0.67 0.37573
Target:  5'- -gGCUCuccauAGCCGCGCCacuCC-AGGCGGg -3'
miRNA:   3'- ggCGGGu----UUGGUGCGG---GGuUCCGCCa -5'
4352 3' -60.1 NC_001720.1 + 17949 0.67 0.367157
Target:  5'- gCCGCCC--GCCGCaCCCCGGcgccGGCGc- -3'
miRNA:   3'- -GGCGGGuuUGGUGcGGGGUU----CCGCca -5'
4352 3' -60.1 NC_001720.1 + 12452 0.67 0.35872
Target:  5'- gCGCCCGugggaCGCGUaCCCAuGGUGGUu -3'
miRNA:   3'- gGCGGGUuug--GUGCG-GGGUuCCGCCA- -5'
4352 3' -60.1 NC_001720.1 + 23506 0.67 0.35042
Target:  5'- gCGCCCAGcuggggcgucuCCGagGCCUUGAGGCGGg -3'
miRNA:   3'- gGCGGGUUu----------GGUg-CGGGGUUCCGCCa -5'
4352 3' -60.1 NC_001720.1 + 34025 0.68 0.310989
Target:  5'- uCUGCCUucuacuACCACGCCguCCAGGGauCGGg -3'
miRNA:   3'- -GGCGGGuu----UGGUGCGG--GGUUCC--GCCa -5'
4352 3' -60.1 NC_001720.1 + 11185 0.69 0.275025
Target:  5'- cCCGCU--GGCCugGUUCaCGGGGCGGg -3'
miRNA:   3'- -GGCGGguUUGGugCGGG-GUUCCGCCa -5'
4352 3' -60.1 NC_001720.1 + 5292 0.69 0.255088
Target:  5'- -aGCCCgAAGCCACaCCUaauAGGCGGUc -3'
miRNA:   3'- ggCGGG-UUUGGUGcGGGgu-UCCGCCA- -5'
4352 3' -60.1 NC_001720.1 + 35333 0.7 0.232747
Target:  5'- aCCGCCCcAuguucaaauacauacGCCaaGCGCUCCGcGGCGGa -3'
miRNA:   3'- -GGCGGGuU---------------UGG--UGCGGGGUuCCGCCa -5'
4352 3' -60.1 NC_001720.1 + 23334 0.7 0.230369
Target:  5'- aCGCCCAucgucagcgaGACCACGCCUCGcuGGCcgauGGg -3'
miRNA:   3'- gGCGGGU----------UUGGUGCGGGGUu-CCG----CCa -5'
4352 3' -60.1 NC_001720.1 + 40750 0.71 0.191989
Target:  5'- aCGCCCAuACCACGUgUCCGAG-CGGa -3'
miRNA:   3'- gGCGGGUuUGGUGCG-GGGUUCcGCCa -5'
4352 3' -60.1 NC_001720.1 + 20220 0.71 0.182101
Target:  5'- cCCGCCUcaAGGCCucggagACGCCCCAgcuGGGCGc- -3'
miRNA:   3'- -GGCGGG--UUUGG------UGCGGGGU---UCCGCca -5'
4352 3' -60.1 NC_001720.1 + 21344 0.71 0.180178
Target:  5'- gCGCCauggucuuuuCCgACGCCgCCAAGGCGGUc -3'
miRNA:   3'- gGCGGguuu------GG-UGCGG-GGUUCCGCCA- -5'
4352 3' -60.1 NC_001720.1 + 5190 1.09 0.000271
Target:  5'- gCCGCCCAAACCACGCCCCAAGGCGGUg -3'
miRNA:   3'- -GGCGGGUUUGGUGCGGGGUUCCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.