miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4355 5' -51.7 NC_001720.1 + 32551 0.66 0.829513
Target:  5'- gGAACGGGuCUGUCaGGaggCGCCAUc-- -3'
miRNA:   3'- -CUUGUCC-GACAG-CCauaGCGGUAucu -5'
4355 5' -51.7 NC_001720.1 + 3943 0.67 0.758283
Target:  5'- ----cGGCUGUCGGagAUCGCgAgcgGGAa -3'
miRNA:   3'- cuuguCCGACAGCCa-UAGCGgUa--UCU- -5'
4355 5' -51.7 NC_001720.1 + 28818 0.68 0.702891
Target:  5'- cGAACc-GCUGUaCGGUGUCGUCGggcGGAg -3'
miRNA:   3'- -CUUGucCGACA-GCCAUAGCGGUa--UCU- -5'
4355 5' -51.7 NC_001720.1 + 7189 1.1 0.001374
Target:  5'- cGAACAGGCUGUCGGUAUCGCCAUAGAg -3'
miRNA:   3'- -CUUGUCCGACAGCCAUAGCGGUAUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.