miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4356 5' -51.9 NC_001720.1 + 9544 1.13 0.000773
Target:  5'- gGGUCUCCGCUGAGCAUGAAGCACAACa -3'
miRNA:   3'- -CCAGAGGCGACUCGUACUUCGUGUUG- -5'
4356 5' -51.9 NC_001720.1 + 10412 0.69 0.643607
Target:  5'- -cUCUUCGCUGAGguUGAGcuGCuuCAGCa -3'
miRNA:   3'- ccAGAGGCGACUCguACUU--CGu-GUUG- -5'
4356 5' -51.9 NC_001720.1 + 11026 0.68 0.666679
Target:  5'- gGGUCUCCGUcGccgccGCGUGAcGCGgGGCa -3'
miRNA:   3'- -CCAGAGGCGaCu----CGUACUuCGUgUUG- -5'
4356 5' -51.9 NC_001720.1 + 14206 0.7 0.551738
Target:  5'- cGG-CUCCGCUgGAGC-UGAGcGCGgAGCa -3'
miRNA:   3'- -CCaGAGGCGA-CUCGuACUU-CGUgUUG- -5'
4356 5' -51.9 NC_001720.1 + 18149 0.66 0.798486
Target:  5'- ----gUCGCUuGGCAUGAaaGGCGCGGCg -3'
miRNA:   3'- ccagaGGCGAcUCGUACU--UCGUGUUG- -5'
4356 5' -51.9 NC_001720.1 + 18319 0.66 0.798486
Target:  5'- cGGUCgg-GUUGGGCAgcGAGUACAGCc -3'
miRNA:   3'- -CCAGaggCGACUCGUacUUCGUGUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.