miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4357 3' -55 NC_001720.1 + 26532 0.65 0.684988
Target:  5'- cGGGGGugCCgGaCGA-GGCGGCUGCGc -3'
miRNA:   3'- -CCUCCugGGgUaGUUgUCGUUGGCGU- -5'
4357 3' -55 NC_001720.1 + 27235 0.66 0.673847
Target:  5'- aGGAGGAa-CCGguuucgCAAUAGCAACCa-- -3'
miRNA:   3'- -CCUCCUggGGUa-----GUUGUCGUUGGcgu -5'
4357 3' -55 NC_001720.1 + 29299 0.66 0.663785
Target:  5'- --cGGACCCCucacCAGCGGCAACaacggucucagcuuaGCGg -3'
miRNA:   3'- ccuCCUGGGGua--GUUGUCGUUGg--------------CGU- -5'
4357 3' -55 NC_001720.1 + 21444 0.66 0.662665
Target:  5'- aGAGGAauguguCCUCAucUCAACcaauuGCAACUGCAa -3'
miRNA:   3'- cCUCCU------GGGGU--AGUUGu----CGUUGGCGU- -5'
4357 3' -55 NC_001720.1 + 30580 0.66 0.659304
Target:  5'- gGGAgaacuGGACCUCGUCuACccuuucugguaccaAGUAGCCGCu -3'
miRNA:   3'- -CCU-----CCUGGGGUAGuUG--------------UCGUUGGCGu -5'
4357 3' -55 NC_001720.1 + 17193 0.66 0.659304
Target:  5'- cGAGGcggcucgcgcagccGCCUCGUcCGGCAcccccGCGACCGCGa -3'
miRNA:   3'- cCUCC--------------UGGGGUA-GUUGU-----CGUUGGCGU- -5'
4357 3' -55 NC_001720.1 + 17619 0.66 0.640223
Target:  5'- aGGGGGAgC-CAUCAACuggGGCAACCuCGg -3'
miRNA:   3'- -CCUCCUgGgGUAGUUG---UCGUUGGcGU- -5'
4357 3' -55 NC_001720.1 + 26592 0.66 0.628985
Target:  5'- cGGcGGGCCuCCA--AGCGGCGuagucGCCGCGc -3'
miRNA:   3'- -CCuCCUGG-GGUagUUGUCGU-----UGGCGU- -5'
4357 3' -55 NC_001720.1 + 26473 0.67 0.617751
Target:  5'- aGGAGGAUCUguUCGAgGGCAACa--- -3'
miRNA:   3'- -CCUCCUGGGguAGUUgUCGUUGgcgu -5'
4357 3' -55 NC_001720.1 + 4010 0.67 0.59533
Target:  5'- cGGAGGuCCCCAgaUCGAaacuGGguACUGCc -3'
miRNA:   3'- -CCUCCuGGGGU--AGUUg---UCguUGGCGu -5'
4357 3' -55 NC_001720.1 + 15410 0.68 0.550949
Target:  5'- -cAGGACuuagaCCCGUCAACGGCcGCCaCAg -3'
miRNA:   3'- ccUCCUG-----GGGUAGUUGUCGuUGGcGU- -5'
4357 3' -55 NC_001720.1 + 6425 0.69 0.486514
Target:  5'- gGGGGGugUCCAUgGGgGGUggUCGCu -3'
miRNA:   3'- -CCUCCugGGGUAgUUgUCGuuGGCGu -5'
4357 3' -55 NC_001720.1 + 2306 0.71 0.388031
Target:  5'- cGGuGGGCgggCCAUCAG-AGCAACCGUAa -3'
miRNA:   3'- -CCuCCUGg--GGUAGUUgUCGUUGGCGU- -5'
4357 3' -55 NC_001720.1 + 32565 0.71 0.388031
Target:  5'- aGGAGG-CgCCAUCAcccucuGCAGCcggcggguaaccGACCGCAc -3'
miRNA:   3'- -CCUCCuGgGGUAGU------UGUCG------------UUGGCGU- -5'
4357 3' -55 NC_001720.1 + 25032 0.72 0.335572
Target:  5'- cGGAGGGCCgCgGUCAcuaugGCGGUAcgcuacACCGCGa -3'
miRNA:   3'- -CCUCCUGG-GgUAGU-----UGUCGU------UGGCGU- -5'
4357 3' -55 NC_001720.1 + 12225 1.11 0.000524
Target:  5'- cGGAGGACCCCAUCAACAGCAACCGCAg -3'
miRNA:   3'- -CCUCCUGGGGUAGUUGUCGUUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.