miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4358 5' -50.4 NC_001720.1 + 12328 0.66 0.898323
Target:  5'- -gGCgCGGGCGCGACaCCcACGGCAgGa -3'
miRNA:   3'- aaUG-GCUUGCGUUGcGGaUGUUGUgC- -5'
4358 5' -50.4 NC_001720.1 + 40623 0.66 0.89081
Target:  5'- -cACCGAcaGCGGCaCCUACAAgucCACGg -3'
miRNA:   3'- aaUGGCUugCGUUGcGGAUGUU---GUGC- -5'
4358 5' -50.4 NC_001720.1 + 30770 0.66 0.883002
Target:  5'- aUUACCGucAAUGCGgacgGCGCgCUGCAgaucggaaucaGCACGg -3'
miRNA:   3'- -AAUGGC--UUGCGU----UGCG-GAUGU-----------UGUGC- -5'
4358 5' -50.4 NC_001720.1 + 33068 0.66 0.883002
Target:  5'- -aACCGGGgaaGUAACacagucCCUGCGACACGa -3'
miRNA:   3'- aaUGGCUUg--CGUUGc-----GGAUGUUGUGC- -5'
4358 5' -50.4 NC_001720.1 + 28154 0.66 0.866528
Target:  5'- -aACCGAcguuCGCGACaccgucaggGCCggcacugACGACACGg -3'
miRNA:   3'- aaUGGCUu---GCGUUG---------CGGa------UGUUGUGC- -5'
4358 5' -50.4 NC_001720.1 + 7839 0.67 0.830374
Target:  5'- aUGuuGGugGCaAACGCaccgUACAGCGCGu -3'
miRNA:   3'- aAUggCUugCG-UUGCGg---AUGUUGUGC- -5'
4358 5' -50.4 NC_001720.1 + 34234 0.68 0.800771
Target:  5'- -cGCCGAACGCuuaGCacgGCAGgACGa -3'
miRNA:   3'- aaUGGCUUGCGuugCGga-UGUUgUGC- -5'
4358 5' -50.4 NC_001720.1 + 26698 0.68 0.790491
Target:  5'- -cACCG-ACGC-ACGCUUuCGGCGCGc -3'
miRNA:   3'- aaUGGCuUGCGuUGCGGAuGUUGUGC- -5'
4358 5' -50.4 NC_001720.1 + 31806 0.68 0.780026
Target:  5'- -cGCCGAACGUcgccGCGCCgcccUACAACGg- -3'
miRNA:   3'- aaUGGCUUGCGu---UGCGG----AUGUUGUgc -5'
4358 5' -50.4 NC_001720.1 + 8993 0.69 0.736581
Target:  5'- aUACCGAGCGCGcauCCUGauggGACACGa -3'
miRNA:   3'- aAUGGCUUGCGUugcGGAUg---UUGUGC- -5'
4358 5' -50.4 NC_001720.1 + 29984 0.69 0.712963
Target:  5'- aUGCCGGACG-AugGCCUaaaguggGCAACAgCGu -3'
miRNA:   3'- aAUGGCUUGCgUugCGGA-------UGUUGU-GC- -5'
4358 5' -50.4 NC_001720.1 + 16343 0.73 0.529617
Target:  5'- uUUACCaGGGCGCGucCGCCUacguGCAGCGCu -3'
miRNA:   3'- -AAUGG-CUUGCGUu-GCGGA----UGUUGUGc -5'
4358 5' -50.4 NC_001720.1 + 40720 0.73 0.507324
Target:  5'- -aACCGuuGCGCGgcgccaagGCGCCUACA-CGCGa -3'
miRNA:   3'- aaUGGCu-UGCGU--------UGCGGAUGUuGUGC- -5'
4358 5' -50.4 NC_001720.1 + 14736 1.06 0.00356
Target:  5'- cUUACCGAACGCAACGCCUACAACACGc -3'
miRNA:   3'- -AAUGGCUUGCGUUGCGGAUGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.