Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4358 | 5' | -50.4 | NC_001720.1 | + | 12328 | 0.66 | 0.898323 |
Target: 5'- -gGCgCGGGCGCGACaCCcACGGCAgGa -3' miRNA: 3'- aaUG-GCUUGCGUUGcGGaUGUUGUgC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 40623 | 0.66 | 0.89081 |
Target: 5'- -cACCGAcaGCGGCaCCUACAAgucCACGg -3' miRNA: 3'- aaUGGCUugCGUUGcGGAUGUU---GUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 33068 | 0.66 | 0.883002 |
Target: 5'- -aACCGGGgaaGUAACacagucCCUGCGACACGa -3' miRNA: 3'- aaUGGCUUg--CGUUGc-----GGAUGUUGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 30770 | 0.66 | 0.883002 |
Target: 5'- aUUACCGucAAUGCGgacgGCGCgCUGCAgaucggaaucaGCACGg -3' miRNA: 3'- -AAUGGC--UUGCGU----UGCG-GAUGU-----------UGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 28154 | 0.66 | 0.866528 |
Target: 5'- -aACCGAcguuCGCGACaccgucaggGCCggcacugACGACACGg -3' miRNA: 3'- aaUGGCUu---GCGUUG---------CGGa------UGUUGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 7839 | 0.67 | 0.830374 |
Target: 5'- aUGuuGGugGCaAACGCaccgUACAGCGCGu -3' miRNA: 3'- aAUggCUugCG-UUGCGg---AUGUUGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 34234 | 0.68 | 0.800771 |
Target: 5'- -cGCCGAACGCuuaGCacgGCAGgACGa -3' miRNA: 3'- aaUGGCUUGCGuugCGga-UGUUgUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 26698 | 0.68 | 0.790491 |
Target: 5'- -cACCG-ACGC-ACGCUUuCGGCGCGc -3' miRNA: 3'- aaUGGCuUGCGuUGCGGAuGUUGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 31806 | 0.68 | 0.780026 |
Target: 5'- -cGCCGAACGUcgccGCGCCgcccUACAACGg- -3' miRNA: 3'- aaUGGCUUGCGu---UGCGG----AUGUUGUgc -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 8993 | 0.69 | 0.736581 |
Target: 5'- aUACCGAGCGCGcauCCUGauggGACACGa -3' miRNA: 3'- aAUGGCUUGCGUugcGGAUg---UUGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 29984 | 0.69 | 0.712963 |
Target: 5'- aUGCCGGACG-AugGCCUaaaguggGCAACAgCGu -3' miRNA: 3'- aAUGGCUUGCgUugCGGA-------UGUUGU-GC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 16343 | 0.73 | 0.529617 |
Target: 5'- uUUACCaGGGCGCGucCGCCUacguGCAGCGCu -3' miRNA: 3'- -AAUGG-CUUGCGUu-GCGGA----UGUUGUGc -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 40720 | 0.73 | 0.507324 |
Target: 5'- -aACCGuuGCGCGgcgccaagGCGCCUACA-CGCGa -3' miRNA: 3'- aaUGGCu-UGCGU--------UGCGGAUGUuGUGC- -5' |
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4358 | 5' | -50.4 | NC_001720.1 | + | 14736 | 1.06 | 0.00356 |
Target: 5'- cUUACCGAACGCAACGCCUACAACACGc -3' miRNA: 3'- -AAUGGCUUGCGUUGCGGAUGUUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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