miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4359 3' -55 NC_001720.1 + 29040 0.68 0.552901
Target:  5'- gUCUGACGG--CUGACgCGGACGGaauCUCc -3'
miRNA:   3'- gAGACUGCUugGACUG-GUCUGCC---GAG- -5'
4359 3' -55 NC_001720.1 + 17722 0.68 0.552901
Target:  5'- aUCUGGCGAAUCaGGCUcaAGAUuucggGGCUCu -3'
miRNA:   3'- gAGACUGCUUGGaCUGG--UCUG-----CCGAG- -5'
4359 3' -55 NC_001720.1 + 40951 0.68 0.551803
Target:  5'- gUCUcGCGAACCUccCCAGgguguucGCGGCUCc -3'
miRNA:   3'- gAGAcUGCUUGGAcuGGUC-------UGCCGAG- -5'
4359 3' -55 NC_001720.1 + 9437 0.7 0.437501
Target:  5'- uUCUGGC-AACCUcGcCCGGAUGGCUg -3'
miRNA:   3'- gAGACUGcUUGGA-CuGGUCUGCCGAg -5'
4359 3' -55 NC_001720.1 + 9682 0.7 0.399041
Target:  5'- gUCUGACGAugCUGcagcaGCguGACGGUg- -3'
miRNA:   3'- gAGACUGCUugGAC-----UGguCUGCCGag -5'
4359 3' -55 NC_001720.1 + 17110 0.98 0.005056
Target:  5'- gCUCUGACGAACCUaGCCAGACGGCUCc -3'
miRNA:   3'- -GAGACUGCUUGGAcUGGUCUGCCGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.