miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4359 5' -61 NC_001720.1 + 17147 1.08 0.000244
Target:  5'- aCUACGCCGCUUGGAGGCCCGCCGACUa -3'
miRNA:   3'- -GAUGCGGCGAACCUCCGGGCGGCUGA- -5'
4359 5' -61 NC_001720.1 + 36342 0.7 0.188024
Target:  5'- -aGCGCCGCUcaGAGGUcauCCGCCGAg- -3'
miRNA:   3'- gaUGCGGCGAacCUCCG---GGCGGCUga -5'
4359 5' -61 NC_001720.1 + 17784 0.67 0.297621
Target:  5'- uUugGCCggagagacGC-UGGGGGCCCuGaCCGACa -3'
miRNA:   3'- gAugCGG--------CGaACCUCCGGG-C-GGCUGa -5'
4359 5' -61 NC_001720.1 + 11038 0.66 0.347076
Target:  5'- --cCGCCGCgugacgcgGGgcaggcggucuacgaAGGCCCGCaCGGCa -3'
miRNA:   3'- gauGCGGCGaa------CC---------------UCCGGGCG-GCUGa -5'
4359 5' -61 NC_001720.1 + 23927 0.66 0.352003
Target:  5'- -cGCGCUaagGUcacagagGGAGGCCUGCCGuACUu -3'
miRNA:   3'- gaUGCGG---CGaa-----CCUCCGGGCGGC-UGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.