miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4360 3' -54 NC_001720.1 + 36411 0.66 0.72605
Target:  5'- gGAGCUcucuggaaaaaucGCGGGCUCUUAUacacuuacUCuccGCCCa -3'
miRNA:   3'- gCUUGA-------------CGUCCGAGAGUA--------AGuc-CGGG- -5'
4360 3' -54 NC_001720.1 + 21750 0.67 0.659079
Target:  5'- gGAGCUGUuuacugccgugauGGGUUCU---UCAGaGCCCa -3'
miRNA:   3'- gCUUGACG-------------UCCGAGAguaAGUC-CGGG- -5'
4360 3' -54 NC_001720.1 + 7030 0.69 0.519008
Target:  5'- cCGAGCUguacgugucacuuccGCAGGCUUugcacuugaugUCGcaaucgCAGGCCCa -3'
miRNA:   3'- -GCUUGA---------------CGUCCGAG-----------AGUaa----GUCCGGG- -5'
4360 3' -54 NC_001720.1 + 18307 0.7 0.441543
Target:  5'- cCGcGGCUGCAGuaCUUUCAUaucgCGGGCCCu -3'
miRNA:   3'- -GC-UUGACGUCc-GAGAGUAa---GUCCGGG- -5'
4360 3' -54 NC_001720.1 + 37517 0.72 0.36569
Target:  5'- gCGAgcaACUGCGGGaauaCUCAUUCAG-CCCc -3'
miRNA:   3'- -GCU---UGACGUCCga--GAGUAAGUCcGGG- -5'
4360 3' -54 NC_001720.1 + 26159 0.77 0.18469
Target:  5'- cCGAugUGguGGuCUCUCA---GGGCCCa -3'
miRNA:   3'- -GCUugACguCC-GAGAGUaagUCCGGG- -5'
4360 3' -54 NC_001720.1 + 17897 1.12 0.000548
Target:  5'- cCGAACUGCAGGCUCUCAUUCAGGCCCu -3'
miRNA:   3'- -GCUUGACGUCCGAGAGUAAGUCCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.