miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4362 3' -52.6 NC_001720.1 + 38149 0.66 0.825928
Target:  5'- cUUCCUgCAGCagaACCAgCGguucAGCUGGGu -3'
miRNA:   3'- -AGGGAaGUUGg--UGGUgGCa---UUGACCC- -5'
4362 3' -52.6 NC_001720.1 + 36195 0.69 0.645336
Target:  5'- gCCaagaGACCACCAccCCGUGAUUGGa -3'
miRNA:   3'- aGGgaagUUGGUGGU--GGCAUUGACCc -5'
4362 3' -52.6 NC_001720.1 + 30414 0.7 0.58888
Target:  5'- aUCCUUUCugacACCACCGauuCCGUuuacuuauCUGGGg -3'
miRNA:   3'- -AGGGAAGu---UGGUGGU---GGCAuu------GACCC- -5'
4362 3' -52.6 NC_001720.1 + 16058 0.71 0.533363
Target:  5'- gCUCUUCAACCACU----UGGCUGGGa -3'
miRNA:   3'- aGGGAAGUUGGUGGuggcAUUGACCC- -5'
4362 3' -52.6 NC_001720.1 + 19777 1.13 0.000879
Target:  5'- aUCCCUUCAACCACCACCGUAACUGGGg -3'
miRNA:   3'- -AGGGAAGUUGGUGGUGGCAUUGACCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.