miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4365 5' -58.8 NC_001720.1 + 14929 0.66 0.45273
Target:  5'- -cACCGUACAGCgguucGGGGUGuaugaggggcaccGGUCUGGg -3'
miRNA:   3'- ccUGGCGUGUCG-----UCCCGCu------------UCGGACC- -5'
4365 5' -58.8 NC_001720.1 + 11070 0.67 0.437246
Target:  5'- aGGcCCGCACGGCA---CGggGCCUa- -3'
miRNA:   3'- -CCuGGCGUGUCGUcccGCuuCGGAcc -5'
4365 5' -58.8 NC_001720.1 + 36376 0.67 0.436288
Target:  5'- --cCCGCGCAGagaacagagcucuCAGGuaGggGUCUGGa -3'
miRNA:   3'- ccuGGCGUGUC-------------GUCCcgCuuCGGACC- -5'
4365 5' -58.8 NC_001720.1 + 11934 0.67 0.412749
Target:  5'- aGGGCgGCGCGGCGacguucggcgaucgcGGcGCGAGGUCUc- -3'
miRNA:   3'- -CCUGgCGUGUCGU---------------CC-CGCUUCGGAcc -5'
4365 5' -58.8 NC_001720.1 + 42309 0.67 0.399914
Target:  5'- aGAgCGUACAGCAGGGCcucuuG-CUGGu -3'
miRNA:   3'- cCUgGCGUGUCGUCCCGcuu--CgGACC- -5'
4365 5' -58.8 NC_001720.1 + 15777 0.67 0.390903
Target:  5'- cGGuACCGCGC-GC-GGGUGAcgAGCgaGGg -3'
miRNA:   3'- -CC-UGGCGUGuCGuCCCGCU--UCGgaCC- -5'
4365 5' -58.8 NC_001720.1 + 33445 0.68 0.373285
Target:  5'- aGGua-GUGCAGCAGGGCGGucuucucuGCCcGGu -3'
miRNA:   3'- -CCuggCGUGUCGUCCCGCUu-------CGGaCC- -5'
4365 5' -58.8 NC_001720.1 + 25765 0.68 0.373285
Target:  5'- uGGGCaCGaGCGGCGGGGCcGgcGCC-GGc -3'
miRNA:   3'- -CCUG-GCgUGUCGUCCCG-CuuCGGaCC- -5'
4365 5' -58.8 NC_001720.1 + 27882 0.68 0.36468
Target:  5'- cGACCGCGCAGCcGGG-GAGGa--GGa -3'
miRNA:   3'- cCUGGCGUGUCGuCCCgCUUCggaCC- -5'
4365 5' -58.8 NC_001720.1 + 4342 0.68 0.356214
Target:  5'- uGGACgGaaauaAGCAGGGUGAAgggguGUCUGGa -3'
miRNA:   3'- -CCUGgCgug--UCGUCCCGCUU-----CGGACC- -5'
4365 5' -58.8 NC_001720.1 + 23922 0.68 0.339699
Target:  5'- uGGACCGCGCuaaggucaCAGaGG-GAGGCCUGc -3'
miRNA:   3'- -CCUGGCGUGuc------GUC-CCgCUUCGGACc -5'
4365 5' -58.8 NC_001720.1 + 3332 0.69 0.323746
Target:  5'- cGuCCGUaauGCAGUGGGGCGAGuGCUUGa -3'
miRNA:   3'- cCuGGCG---UGUCGUCCCGCUU-CGGACc -5'
4365 5' -58.8 NC_001720.1 + 36532 0.71 0.221295
Target:  5'- aGGAgCCGCGCAGCcucuauGGCGAuaccgacAGCCUGu -3'
miRNA:   3'- -CCU-GGCGUGUCGuc----CCGCU-------UCGGACc -5'
4365 5' -58.8 NC_001720.1 + 11771 0.74 0.150235
Target:  5'- uGGACCuGCACAGCAGGcuaccauuccuaauuGCGGugucgcGCUUGGg -3'
miRNA:   3'- -CCUGG-CGUGUCGUCC---------------CGCUu-----CGGACC- -5'
4365 5' -58.8 NC_001720.1 + 20732 1.11 0.000253
Target:  5'- uGGACCGCACAGCAGGGCGAAGCCUGGc -3'
miRNA:   3'- -CCUGGCGUGUCGUCCCGCUUCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.