miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4367 5' -48.4 NC_001720.1 + 9118 0.66 0.961379
Target:  5'- aCGCGAGGCAUGA---AGGAUCGa-- -3'
miRNA:   3'- aGUGCUCUGUGCUauuUUCUGGCgcu -5'
4367 5' -48.4 NC_001720.1 + 23963 0.67 0.948136
Target:  5'- aCGCGAGuCGCGAUGAAAGcgaagcucagaACCccuCGAa -3'
miRNA:   3'- aGUGCUCuGUGCUAUUUUC-----------UGGc--GCU- -5'
4367 5' -48.4 NC_001720.1 + 11048 0.67 0.926257
Target:  5'- aCGCGGGGCagGCGGUcuacGAAGGcCCGCa- -3'
miRNA:   3'- aGUGCUCUG--UGCUA----UUUUCuGGCGcu -5'
4367 5' -48.4 NC_001720.1 + 14839 0.67 0.926257
Target:  5'- -gACgGAGGCGCGAcggu-GGCCGUGAc -3'
miRNA:   3'- agUG-CUCUGUGCUauuuuCUGGCGCU- -5'
4367 5' -48.4 NC_001720.1 + 20674 0.67 0.925647
Target:  5'- --cCGAGGCGCGAcucgcaAGAAGgucagccGCCGCGAg -3'
miRNA:   3'- aguGCUCUGUGCUa-----UUUUC-------UGGCGCU- -5'
4367 5' -48.4 NC_001720.1 + 28850 0.68 0.916122
Target:  5'- cCACGGccgugccggucgguuGACGgcugcCGAUGGAAGGCCGCa- -3'
miRNA:   3'- aGUGCU---------------CUGU-----GCUAUUUUCUGGCGcu -5'
4367 5' -48.4 NC_001720.1 + 11098 0.68 0.913465
Target:  5'- gCGCGcuucGGACGCGGUGAuGGcucuGCCGUGGc -3'
miRNA:   3'- aGUGC----UCUGUGCUAUUuUC----UGGCGCU- -5'
4367 5' -48.4 NC_001720.1 + 32590 0.68 0.913465
Target:  5'- gUAgGGGAUcCGGUGAagGAGACCGgGAa -3'
miRNA:   3'- aGUgCUCUGuGCUAUU--UUCUGGCgCU- -5'
4367 5' -48.4 NC_001720.1 + 25002 0.68 0.899446
Target:  5'- -gGCGAgGACGCGcuc-AAGGCCGUGGa -3'
miRNA:   3'- agUGCU-CUGUGCuauuUUCUGGCGCU- -5'
4367 5' -48.4 NC_001720.1 + 11198 0.69 0.85925
Target:  5'- uUCACGGGGCGgGAacu-GGACCGUc- -3'
miRNA:   3'- -AGUGCUCUGUgCUauuuUCUGGCGcu -5'
4367 5' -48.4 NC_001720.1 + 33211 0.7 0.850382
Target:  5'- gUCACGcGACACGcauucAUGAgaacaaccgGAGACCGCa- -3'
miRNA:   3'- -AGUGCuCUGUGC-----UAUU---------UUCUGGCGcu -5'
4367 5' -48.4 NC_001720.1 + 9011 0.7 0.822281
Target:  5'- -gAUGGGACACGAUcccgcGAGACCaGCGu -3'
miRNA:   3'- agUGCUCUGUGCUAuu---UUCUGG-CGCu -5'
4367 5' -48.4 NC_001720.1 + 6446 0.72 0.715991
Target:  5'- gCugGuGACGCGcugGUAGAAGucCCGCGAg -3'
miRNA:   3'- aGugCuCUGUGC---UAUUUUCu-GGCGCU- -5'
4367 5' -48.4 NC_001720.1 + 31301 0.72 0.70463
Target:  5'- cCACG-GGCGCGGUAAacGAGAacgCGCGAu -3'
miRNA:   3'- aGUGCuCUGUGCUAUU--UUCUg--GCGCU- -5'
4367 5' -48.4 NC_001720.1 + 15786 0.8 0.298682
Target:  5'- gCGCGGGugACGAgcGAGGGCgGCGAg -3'
miRNA:   3'- aGUGCUCugUGCUauUUUCUGgCGCU- -5'
4367 5' -48.4 NC_001720.1 + 23375 1.11 0.003482
Target:  5'- aUCACGAGACACGAUAAAAGACCGCGAc -3'
miRNA:   3'- -AGUGCUCUGUGCUAUUUUCUGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.