miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4371 5' -55 NC_001720.1 + 23760 0.66 0.664573
Target:  5'- -gAUCUgcgcgCCGuCCGCGcGCaagUCGUUGCCa -3'
miRNA:   3'- uaUGGAa----GGU-GGUGC-CGa--AGCAGCGG- -5'
4371 5' -55 NC_001720.1 + 25440 0.66 0.653374
Target:  5'- aGUACUgca-GCCGCGGC---GUCGCCg -3'
miRNA:   3'- -UAUGGaaggUGGUGCCGaagCAGCGG- -5'
4371 5' -55 NC_001720.1 + 17358 0.66 0.630925
Target:  5'- gAUACCUaUCAUUGCGGCcgcuaUCGgCGCCa -3'
miRNA:   3'- -UAUGGAaGGUGGUGCCGa----AGCaGCGG- -5'
4371 5' -55 NC_001720.1 + 20832 0.66 0.630925
Target:  5'- -cGCaacgCGCCAUGGCcacCGUCGCCa -3'
miRNA:   3'- uaUGgaagGUGGUGCCGaa-GCAGCGG- -5'
4371 5' -55 NC_001720.1 + 38436 0.67 0.619697
Target:  5'- aAUACCggaCCGCCuauuaggugUGGCUUCGggcucCGCCu -3'
miRNA:   3'- -UAUGGaa-GGUGGu--------GCCGAAGCa----GCGG- -5'
4371 5' -55 NC_001720.1 + 11538 0.67 0.597284
Target:  5'- -cGCCUUCUugcaaGCCACccGCUcCGUUGCCc -3'
miRNA:   3'- uaUGGAAGG-----UGGUGc-CGAaGCAGCGG- -5'
4371 5' -55 NC_001720.1 + 18819 0.67 0.597284
Target:  5'- aGUGCCUcuUCCGCCuuuUGGUUuUCGUcCGCg -3'
miRNA:   3'- -UAUGGA--AGGUGGu--GCCGA-AGCA-GCGg -5'
4371 5' -55 NC_001720.1 + 25543 0.67 0.581665
Target:  5'- cUGCCUUCCGCCauuuucuacuggaACGGUccaacaucccagcgGUCGCCg -3'
miRNA:   3'- uAUGGAAGGUGG-------------UGCCGaag-----------CAGCGG- -5'
4371 5' -55 NC_001720.1 + 26597 0.69 0.4677
Target:  5'- -gGCC-UCCAa-GCGGCguaGUCGCCg -3'
miRNA:   3'- uaUGGaAGGUggUGCCGaagCAGCGG- -5'
4371 5' -55 NC_001720.1 + 23580 0.74 0.235261
Target:  5'- -cACgaagUCCGCCACGuCUUCGUCGCUg -3'
miRNA:   3'- uaUGga--AGGUGGUGCcGAAGCAGCGG- -5'
4371 5' -55 NC_001720.1 + 25140 1.09 0.000787
Target:  5'- cAUACCUUCCACCACGGCUUCGUCGCCc -3'
miRNA:   3'- -UAUGGAAGGUGGUGCCGAAGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.