miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4375 3' -53.8 NC_001720.1 + 30585 0.66 0.771008
Target:  5'- cGCuUCUGACGguACCGAGcugguCGGUUg- -3'
miRNA:   3'- uCG-GGACUGCuuUGGCUCu----GCCAAgg -5'
4375 3' -53.8 NC_001720.1 + 28316 0.66 0.72888
Target:  5'- uGGUCuCUGugGcgGCCGuuGACGGgucuaagUCCu -3'
miRNA:   3'- -UCGG-GACugCuuUGGCu-CUGCCa------AGG- -5'
4375 3' -53.8 NC_001720.1 + 17212 0.67 0.718068
Target:  5'- cGGCUCggagccGGCGGuuCCGAGGCGGa--- -3'
miRNA:   3'- -UCGGGa-----CUGCUuuGGCUCUGCCaagg -5'
4375 3' -53.8 NC_001720.1 + 9475 0.67 0.718068
Target:  5'- aAGCCUUcGuCGAGGgcuUUGAGACGGUcgUCCu -3'
miRNA:   3'- -UCGGGA-CuGCUUU---GGCUCUGCCA--AGG- -5'
4375 3' -53.8 NC_001720.1 + 17273 0.67 0.707167
Target:  5'- uGCCCaUGACGGGuACCGgcggaAGGCGGcgCa -3'
miRNA:   3'- uCGGG-ACUGCUU-UGGC-----UCUGCCaaGg -5'
4375 3' -53.8 NC_001720.1 + 24907 0.67 0.696191
Target:  5'- cGGCCCggGAUGcuaguuGACUGAGGcCGGgUCCc -3'
miRNA:   3'- -UCGGGa-CUGCu-----UUGGCUCU-GCCaAGG- -5'
4375 3' -53.8 NC_001720.1 + 39165 0.69 0.573676
Target:  5'- cGCCacaaaauCGAAACCGGGGCGGcggCCc -3'
miRNA:   3'- uCGGgacu---GCUUUGGCUCUGCCaa-GG- -5'
4375 3' -53.8 NC_001720.1 + 27408 0.69 0.572571
Target:  5'- cGCCCUGGuaaaauaccuuauUGAAACuCGGGAacaGGUUCa -3'
miRNA:   3'- uCGGGACU-------------GCUUUG-GCUCUg--CCAAGg -5'
4375 3' -53.8 NC_001720.1 + 14255 0.7 0.53968
Target:  5'- uGCCCUG-C---GCCGAGGCgcucaagGGUUCCa -3'
miRNA:   3'- uCGGGACuGcuuUGGCUCUG-------CCAAGG- -5'
4375 3' -53.8 NC_001720.1 + 14919 0.71 0.456705
Target:  5'- cGCCC-GACGAcACCGuacaGCGGUUCg -3'
miRNA:   3'- uCGGGaCUGCUuUGGCuc--UGCCAAGg -5'
4375 3' -53.8 NC_001720.1 + 43060 0.71 0.456705
Target:  5'- cAGUCUgcgUGAUGAGACCGugccAGAUGGUcUCCg -3'
miRNA:   3'- -UCGGG---ACUGCUUUGGC----UCUGCCA-AGG- -5'
4375 3' -53.8 NC_001720.1 + 22499 0.71 0.446683
Target:  5'- aGGCCCgggagccgguguUGACGAuAGCUGAGGCGGgcaCg -3'
miRNA:   3'- -UCGGG------------ACUGCU-UUGGCUCUGCCaagG- -5'
4375 3' -53.8 NC_001720.1 + 15580 0.73 0.353771
Target:  5'- cGGCCCUGACGGugUCGcGAacguCGGUUCg -3'
miRNA:   3'- -UCGGGACUGCUuuGGCuCU----GCCAAGg -5'
4375 3' -53.8 NC_001720.1 + 17108 0.8 0.139772
Target:  5'- cGGCUCUGACGAAccuaGCC-AGACGGcUCCa -3'
miRNA:   3'- -UCGGGACUGCUU----UGGcUCUGCCaAGG- -5'
4375 3' -53.8 NC_001720.1 + 28115 1.11 0.000854
Target:  5'- cAGCCCUGACGAAACCGAGACGGUUCCc -3'
miRNA:   3'- -UCGGGACUGCUUUGGCUCUGCCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.