miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4378 3' -49.3 NC_001720.1 + 24437 0.66 0.942359
Target:  5'- aUCCGCcagAAACgCUCuCcgUCGACAGCGu -3'
miRNA:   3'- -GGGCG---UUUGgGAGcGuaAGUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 31581 0.66 0.936995
Target:  5'- gCCCGU----CCUCGCcacCAACAACAc -3'
miRNA:   3'- -GGGCGuuugGGAGCGuaaGUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 13054 0.66 0.931322
Target:  5'- gCCGUGAGCCUga-CGUUCAACAAg- -3'
miRNA:   3'- gGGCGUUUGGGagcGUAAGUUGUUgu -5'
4378 3' -49.3 NC_001720.1 + 6162 0.66 0.931322
Target:  5'- gCUGgGGACCCUCGUAgUCuGCGAa- -3'
miRNA:   3'- gGGCgUUUGGGAGCGUaAGuUGUUgu -5'
4378 3' -49.3 NC_001720.1 + 28148 0.66 0.931322
Target:  5'- aCCGCGAACCgaCGU--UC-GCGACAc -3'
miRNA:   3'- gGGCGUUUGGgaGCGuaAGuUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 25065 0.66 0.931322
Target:  5'- aCCGC-GACCCUCGaacUCAugGAa- -3'
miRNA:   3'- gGGCGuUUGGGAGCguaAGUugUUgu -5'
4378 3' -49.3 NC_001720.1 + 39996 0.67 0.912445
Target:  5'- -gCGCGGACCuCUCGC--UCGcCAACGa -3'
miRNA:   3'- ggGCGUUUGG-GAGCGuaAGUuGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 1321 0.67 0.89081
Target:  5'- uCCCGUugauaGGACCCUUGCGacgaagUCGACuuCGc -3'
miRNA:   3'- -GGGCG-----UUUGGGAGCGUa-----AGUUGuuGU- -5'
4378 3' -49.3 NC_001720.1 + 14907 0.68 0.874905
Target:  5'- gCCGUggGCCUcCGCc--CGACGACAc -3'
miRNA:   3'- gGGCGuuUGGGaGCGuaaGUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 39508 0.68 0.857877
Target:  5'- cCCCGCAAACuCCUC-CAaUCGG-AACAg -3'
miRNA:   3'- -GGGCGUUUG-GGAGcGUaAGUUgUUGU- -5'
4378 3' -49.3 NC_001720.1 + 41187 0.68 0.83979
Target:  5'- gCCaCGCAAGCCCUCaggagGCAa--AAUAACAu -3'
miRNA:   3'- -GG-GCGUUUGGGAG-----CGUaagUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 39599 0.69 0.820724
Target:  5'- gCCCGac-ACCCUCaaggcuGCGUUCuACAACGu -3'
miRNA:   3'- -GGGCguuUGGGAG------CGUAAGuUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 31018 0.71 0.702713
Target:  5'- gCUGCAGGuCCgCUCGCcgUC-ACAGCAg -3'
miRNA:   3'- gGGCGUUU-GG-GAGCGuaAGuUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 32699 0.72 0.644896
Target:  5'- aCCGCcuGCCC-CGCGUcacgCGGCGGCGa -3'
miRNA:   3'- gGGCGuuUGGGaGCGUAa---GUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 23554 0.74 0.559113
Target:  5'- cCCCGCAuACCCUCccauguucugGCGggaauauugauggUCAGCAGCGu -3'
miRNA:   3'- -GGGCGUuUGGGAG----------CGUa------------AGUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 14701 0.76 0.443091
Target:  5'- aCCGCcuGCCUgUCGCGUUCGAUGGCGc -3'
miRNA:   3'- gGGCGuuUGGG-AGCGUAAGUUGUUGU- -5'
4378 3' -49.3 NC_001720.1 + 28483 1.12 0.00189
Target:  5'- aCCCGCAAACCCUCGCAUUCAACAACAg -3'
miRNA:   3'- -GGGCGUUUGGGAGCGUAAGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.