miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4380 3' -55.1 NC_001720.1 + 25179 0.66 0.7073
Target:  5'- aGGU-CGCCcccaugucCAACAcCCAGCuGUCCCc -3'
miRNA:   3'- cCCAuGUGGa-------GUUGU-GGUCGcCAGGG- -5'
4380 3' -55.1 NC_001720.1 + 9356 0.66 0.696418
Target:  5'- -----aACCUCGACgucACCgAGUGGUCCUg -3'
miRNA:   3'- cccaugUGGAGUUG---UGG-UCGCCAGGG- -5'
4380 3' -55.1 NC_001720.1 + 7500 0.66 0.674476
Target:  5'- aGGGU-CGCCUCGACuuCCA--GGUCUa -3'
miRNA:   3'- -CCCAuGUGGAGUUGu-GGUcgCCAGGg -5'
4380 3' -55.1 NC_001720.1 + 24160 0.66 0.674476
Target:  5'- gGGGgACgACCUgGaACACCAGUGGacgaggagCCCc -3'
miRNA:   3'- -CCCaUG-UGGAgU-UGUGGUCGCCa-------GGG- -5'
4380 3' -55.1 NC_001720.1 + 19210 0.66 0.673373
Target:  5'- aGGGUAgaaauuguagcgUACCUCcaaguguucggcgGGCACgCGGCGGUCg- -3'
miRNA:   3'- -CCCAU------------GUGGAG-------------UUGUG-GUCGCCAGgg -5'
4380 3' -55.1 NC_001720.1 + 28442 0.67 0.619096
Target:  5'- cGGGcuCGuCCUCAACACCAaCGGgCUCa -3'
miRNA:   3'- -CCCauGU-GGAGUUGUGGUcGCCaGGG- -5'
4380 3' -55.1 NC_001720.1 + 34782 0.67 0.596954
Target:  5'- uGGUGCGagacaCUCuacagcuCACCAGCGGggCCa -3'
miRNA:   3'- cCCAUGUg----GAGuu-----GUGGUCGCCagGG- -5'
4380 3' -55.1 NC_001720.1 + 28929 0.67 0.59585
Target:  5'- -aGUGCGacagcucCCUCAccuACACCAGCGG-CaCCa -3'
miRNA:   3'- ccCAUGU-------GGAGU---UGUGGUCGCCaG-GG- -5'
4380 3' -55.1 NC_001720.1 + 12451 0.68 0.585925
Target:  5'- cGGG-ACGCCgcgCGGCgaGCCA-CGGUgCCCg -3'
miRNA:   3'- -CCCaUGUGGa--GUUG--UGGUcGCCA-GGG- -5'
4380 3' -55.1 NC_001720.1 + 17958 0.68 0.531528
Target:  5'- ---cGCACCcCGGCGCCGGCgccGGcCCCg -3'
miRNA:   3'- cccaUGUGGaGUUGUGGUCG---CCaGGG- -5'
4380 3' -55.1 NC_001720.1 + 18043 0.72 0.331345
Target:  5'- --uUACGuCUUCGGCGCCAGCcGUCCCc -3'
miRNA:   3'- cccAUGU-GGAGUUGUGGUCGcCAGGG- -5'
4380 3' -55.1 NC_001720.1 + 17191 0.75 0.234371
Target:  5'- gGGGUuccucgagcgaguauGCGgCUCGGaGCCGGCGGUUCCg -3'
miRNA:   3'- -CCCA---------------UGUgGAGUUgUGGUCGCCAGGG- -5'
4380 3' -55.1 NC_001720.1 + 28734 1.15 0.000357
Target:  5'- gGGGUACACCUCAACACCAGCGGUCCCa -3'
miRNA:   3'- -CCCAUGUGGAGUUGUGGUCGCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.