miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4380 5' -57.4 NC_001720.1 + 18574 0.66 0.582003
Target:  5'- gGGGCGACCuacuucgacauaaAGGGU---GugCUGGACc -3'
miRNA:   3'- -CCUGCUGG-------------UCCCGuagCugGACCUGc -5'
4380 5' -57.4 NC_001720.1 + 24977 0.66 0.561582
Target:  5'- cGugGACCcgacAGGGCGccuccaCGGCgaGGACGc -3'
miRNA:   3'- cCugCUGG----UCCCGUa-----GCUGgaCCUGC- -5'
4380 5' -57.4 NC_001720.1 + 19405 0.66 0.550911
Target:  5'- aGGAuCGGCCGGGGCc---ACgaGGGCGu -3'
miRNA:   3'- -CCU-GCUGGUCCCGuagcUGgaCCUGC- -5'
4380 5' -57.4 NC_001720.1 + 18127 0.67 0.498632
Target:  5'- gGGcACGACCgggacaauggAGGGCA-CG-CUUGGACa -3'
miRNA:   3'- -CC-UGCUGG----------UCCCGUaGCuGGACCUGc -5'
4380 5' -57.4 NC_001720.1 + 18586 0.67 0.478336
Target:  5'- -cGCGuACCAGGGCGaCGaaGCCgUGGugGa -3'
miRNA:   3'- ccUGC-UGGUCCCGUaGC--UGG-ACCugC- -5'
4380 5' -57.4 NC_001720.1 + 12028 0.7 0.325271
Target:  5'- gGGugGACCAGGGCugguucuuccCGAaCgaGGACa -3'
miRNA:   3'- -CCugCUGGUCCCGua--------GCU-GgaCCUGc -5'
4380 5' -57.4 NC_001720.1 + 12410 0.72 0.241055
Target:  5'- uGGCGGCCGGGGC--CGGugUGGACGa -3'
miRNA:   3'- cCUGCUGGUCCCGuaGCUggACCUGC- -5'
4380 5' -57.4 NC_001720.1 + 28768 1.1 0.000435
Target:  5'- cGGACGACCAGGGCAUCGACCUGGACGu -3'
miRNA:   3'- -CCUGCUGGUCCCGUAGCUGGACCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.