miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4383 5' -50.8 NC_001720.1 + 15341 0.66 0.894251
Target:  5'- gCCCAGcuGGCCUUGcGU-GUUGAgGGUGa -3'
miRNA:   3'- -GGGUU--UUGGGAC-CAgCAACUgCCAUc -5'
4383 5' -50.8 NC_001720.1 + 9702 0.66 0.87895
Target:  5'- gCCCGAu-CCCUGGaCGgcG-UGGUAGu -3'
miRNA:   3'- -GGGUUuuGGGACCaGCaaCuGCCAUC- -5'
4383 5' -50.8 NC_001720.1 + 28848 0.67 0.845134
Target:  5'- gCCCAcgGCCgUgccGGUCGgUUGACGGc-- -3'
miRNA:   3'- -GGGUuuUGGgA---CCAGC-AACUGCCauc -5'
4383 5' -50.8 NC_001720.1 + 14970 0.67 0.836056
Target:  5'- gCCAGGucgauGCCCUGGUCGUccGCaGUAa -3'
miRNA:   3'- gGGUUU-----UGGGACCAGCAacUGcCAUc -5'
4383 5' -50.8 NC_001720.1 + 4611 0.68 0.81722
Target:  5'- uCCCAgaaaGAACCCgcaGcCGUUGGCGGg-- -3'
miRNA:   3'- -GGGU----UUUGGGac-CaGCAACUGCCauc -5'
4383 5' -50.8 NC_001720.1 + 20184 0.71 0.644654
Target:  5'- aCCUcgaAGAGCCCgGGcCGUcGACGGUAa -3'
miRNA:   3'- -GGG---UUUUGGGaCCaGCAaCUGCCAUc -5'
4383 5' -50.8 NC_001720.1 + 30862 1.1 0.002091
Target:  5'- uCCCAAAACCCUGGUCGUUGACGGUAGc -3'
miRNA:   3'- -GGGUUUUGGGACCAGCAACUGCCAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.