miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4385 5' -55.9 NC_001720.1 + 10135 0.66 0.634393
Target:  5'- uGCCccGGAagcucuugaaGUACuuUCGGGUCUCUUCCa -3'
miRNA:   3'- cCGGucCCU----------UAUG--AGCCUAGGGGAGG- -5'
4385 5' -55.9 NC_001720.1 + 14450 0.71 0.36869
Target:  5'- uGGUgAGGGGuccGCUCGGGUCCguguugaCCUCg -3'
miRNA:   3'- -CCGgUCCCUua-UGAGCCUAGG-------GGAGg -5'
4385 5' -55.9 NC_001720.1 + 19410 0.74 0.219615
Target:  5'- cGGCCGGGGccacgagggcgucccGCUCGaGAUCCUCUUCa -3'
miRNA:   3'- -CCGGUCCCuua------------UGAGC-CUAGGGGAGG- -5'
4385 5' -55.9 NC_001720.1 + 20776 0.67 0.557648
Target:  5'- cGCCAGcgacgaGGAAUcCcCGGAggCCCCUCUg -3'
miRNA:   3'- cCGGUC------CCUUAuGaGCCUa-GGGGAGG- -5'
4385 5' -55.9 NC_001720.1 + 31126 0.67 0.557648
Target:  5'- aGCCGGcGuGAAagccgGCUCGGA-CCCCUUa -3'
miRNA:   3'- cCGGUC-C-CUUa----UGAGCCUaGGGGAGg -5'
4385 5' -55.9 NC_001720.1 + 36116 0.68 0.535067
Target:  5'- uGGCCAGGaGAAUggguagaAUUaauaaGGAcUCCgCCUCCa -3'
miRNA:   3'- -CCGGUCC-CUUA-------UGAg----CCU-AGG-GGAGG- -5'
4385 5' -55.9 NC_001720.1 + 37712 1.13 0.000401
Target:  5'- uGGCCAGGGAAUACUCGGAUCCCCUCCc -3'
miRNA:   3'- -CCGGUCCCUUAUGAGCCUAGGGGAGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.