Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 4386 | 5' | -52.4 | NC_001720.1 | + | 14837 | 0.66 | 0.793874 |
|
Target: 5'- --uGGGACGGGggGACCGgGCuuuuucgCUAGUc -3' miRNA: 3'- cucCUCUGUCCuuUUGGUgCG-------GAUCA- -5' |
|||||||
| 4386 | 5' | -52.4 | NC_001720.1 | + | 8082 | 0.66 | 0.793874 |
|
Target: 5'- -uGGGGGCAGGAugugaggGGGCCG-GCCUAu- -3' miRNA: 3'- cuCCUCUGUCCU-------UUUGGUgCGGAUca -5' |
|||||||
| 4386 | 5' | -52.4 | NC_001720.1 | + | 25858 | 0.66 | 0.752811 |
|
Target: 5'- ---cGGACGGGAAGACCuucaagcucACGCCUGa- -3' miRNA: 3'- cuccUCUGUCCUUUUGG---------UGCGGAUca -5' |
|||||||
| 4386 | 5' | -52.4 | NC_001720.1 | + | 28251 | 0.67 | 0.741921 |
|
Target: 5'- gGAGGAGGCGGGG--GCgGCGgC-AGUg -3' miRNA: 3'- -CUCCUCUGUCCUuuUGgUGCgGaUCA- -5' |
|||||||
| 4386 | 5' | -52.4 | NC_001720.1 | + | 13592 | 0.67 | 0.708574 |
|
Target: 5'- uGGGGGuGCAGGAGAGcauCCAgGCgCUGGUc -3' miRNA: 3'- cUCCUC-UGUCCUUUU---GGUgCG-GAUCA- -5' |
|||||||
| 4386 | 5' | -52.4 | NC_001720.1 | + | 38481 | 1.08 | 0.001556 |
|
Target: 5'- gGAGGAGACAGGAAAACCACGCCUAGUg -3' miRNA: 3'- -CUCCUCUGUCCUUUUGGUGCGGAUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home