miRNA: 3'- cuUUUC-AUUACCGU-GCC-AUUGGGAca -5'
miRNA: 3'- -CUUUUCAUUACCGUGCCAUUGGGACA- -5'
Results 1 - 2 of 2 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 4391 | 5' | -47.4 | NC_001721.1 | + | 3382 | 0.67 | 0.258649 |
|
Target: 5'- -cAAAGuUGGUGGCAgCGGcUGGCCCUu- -3' miRNA: 3'- cuUUUC-AUUACCGU-GCC-AUUGGGAca -5' |
|||||||
| 4391 | 5' | -47.4 | NC_001721.1 | + | 3161 | 1.08 | 0.000157 |
|
Target: 5'- gGAAAAGUAAUGGCACGGUAACCCUGUu -3' miRNA: 3'- -CUUUUCAUUACCGUGCCAUUGGGACA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home