miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
451 3' -49 AC_000013.1 + 13768 0.66 0.943485
Target:  5'- aCGCCCGG-CCGAGCAGaccgcguucggGAAGAgCUgCg -3'
miRNA:   3'- -GUGGGCUaGGCUUGUU-----------UUUCU-GAgGa -5'
451 3' -49 AC_000013.1 + 14550 0.67 0.899906
Target:  5'- gGCCCG-UCCGGcACGAGcuuAAGGCgUCCg -3'
miRNA:   3'- gUGGGCuAGGCU-UGUUU---UUCUG-AGGa -5'
451 3' -49 AC_000013.1 + 14706 0.67 0.899906
Target:  5'- cCAUCUGGUCCGGAUAAAu-GGCgcCCUg -3'
miRNA:   3'- -GUGGGCUAGGCUUGUUUuuCUGa-GGA- -5'
451 3' -49 AC_000013.1 + 11153 0.68 0.868354
Target:  5'- -uUCCGGUCCGAGCAGAGuGuuUUCUa -3'
miRNA:   3'- guGGGCUAGGCUUGUUUUuCugAGGA- -5'
451 3' -49 AC_000013.1 + 39958 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 40498 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 40363 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 40228 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 40093 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 38745 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39824 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39689 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39554 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39419 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39284 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39149 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 39014 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 38880 0.69 0.850897
Target:  5'- gCACCCGcgCCGGACuu--AGuCUCUg -3'
miRNA:   3'- -GUGGGCuaGGCUUGuuuuUCuGAGGa -5'
451 3' -49 AC_000013.1 + 5163 0.93 0.041575
Target:  5'- aCACCCGAUCCGAACAAAAA-ACUCCUu -3'
miRNA:   3'- -GUGGGCUAGGCUUGUUUUUcUGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.