miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
451 5' -56 AC_000013.1 + 18750 0.66 0.659056
Target:  5'- --cGGAGGCC-GCAGGggCGGgGuaguUCGCc -3'
miRNA:   3'- aguCCUCUGGuUGUCCa-GCCgC----AGCG- -5'
451 5' -56 AC_000013.1 + 1632 0.67 0.592947
Target:  5'- --uGGAGAa-GAC-GGUCGGUGUCGg -3'
miRNA:   3'- aguCCUCUggUUGuCCAGCCGCAGCg -5'
451 5' -56 AC_000013.1 + 15943 0.67 0.592947
Target:  5'- aUCGGaGGGACUGGCGGGUaaCGGgaUCGCc -3'
miRNA:   3'- -AGUC-CUCUGGUUGUCCA--GCCgcAGCG- -5'
451 5' -56 AC_000013.1 + 5288 0.67 0.560213
Target:  5'- aCGGGGGAUCGAucCAGG-CGGUGgaGCa -3'
miRNA:   3'- aGUCCUCUGGUU--GUCCaGCCGCagCG- -5'
451 5' -56 AC_000013.1 + 14380 0.68 0.506909
Target:  5'- -aGGGAGAauCCAGC-GG-CGGCGagGCg -3'
miRNA:   3'- agUCCUCU--GGUUGuCCaGCCGCagCG- -5'
451 5' -56 AC_000013.1 + 4680 0.69 0.475975
Target:  5'- gCAGGAGGCgaggacguuguaCAGCAGcUUGGCGUUGg -3'
miRNA:   3'- aGUCCUCUG------------GUUGUCcAGCCGCAGCg -5'
451 5' -56 AC_000013.1 + 24108 0.73 0.249876
Target:  5'- aCGGGAaACCAGaguGGUCGGCGUCc- -3'
miRNA:   3'- aGUCCUcUGGUUgu-CCAGCCGCAGcg -5'
451 5' -56 AC_000013.1 + 5127 1.13 0.000403
Target:  5'- cUCAGGAGACCAACAGGUCGGCGUCGCa -3'
miRNA:   3'- -AGUCCUCUGGUUGUCCAGCCGCAGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.