miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
455	3'	-52.8	AC_000013.1	+	6446	0.66	0.751698
	Target:  5'- aGCCUAcuucgcuuuucuCCAGCagaaCCAAAAGuucagcuGGCUCAc -3' miRNA:   3'- -CGGAU------------GGUCGa---GGUUUUCu------CCGAGUa -5'
455	3'	-52.8	AC_000013.1	+	28087	0.66	0.718437
	Target:  5'- cCCUGgCAGCUCCAGGucGAGcCUCGc -3' miRNA:   3'- cGGAUgGUCGAGGUUUu-CUCcGAGUa -5'
455	3'	-52.8	AC_000013.1	+	5890	0.67	0.707142
	Target:  5'- uGCCUGCUGGUUUCuaugguGAAGGGGC-CGc -3' miRNA:   3'- -CGGAUGGUCGAGGu-----UUUCUCCGaGUa -5'
455	3'	-52.8	AC_000013.1	+	25309	0.67	0.695766
	Target:  5'- uCCU-CCGGCUCCuccuAGAGaGUUCAg -3' miRNA:   3'- cGGAuGGUCGAGGuuu-UCUC-CGAGUa -5'
455	3'	-52.8	AC_000013.1	+	9033	0.67	0.661279
	Target:  5'- uGCCUcCCAuuuGCUCCAggcgAGGGGGGCgccUCGUg -3' miRNA:   3'- -CGGAuGGU---CGAGGU----UUUCUCCG---AGUA- -5'
455	3'	-52.8	AC_000013.1	+	40944	0.68	0.603353
	Target:  5'- uGUCUugaACUAGCuUCCAGAAGAuGGCaUCGUg -3' miRNA:   3'- -CGGA---UGGUCG-AGGUUUUCU-CCG-AGUA- -5'
455	3'	-52.8	AC_000013.1	+	6134	1.08	0.001272
	Target:  5'- cGCCUACCAGCUCCAAAAGAGGCUCAUu -3' miRNA:   3'- -CGGAUGGUCGAGGUUUUCUCCGAGUA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home