miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
457 3' -54.9 AC_000013.1 + 10455 0.66 0.708113
Target:  5'- aGACAC--GCGGCCcggCUUCGUUGCCc -3'
miRNA:   3'- cCUGUGgcUGUCGGa--GAAGCAGUGGc -5'
457 3' -54.9 AC_000013.1 + 40897 0.66 0.697274
Target:  5'- cGACACCGAUguuAGCUUCUUCuggUACgGa -3'
miRNA:   3'- cCUGUGGCUG---UCGGAGAAGca-GUGgC- -5'
457 3' -54.9 AC_000013.1 + 19730 0.66 0.686371
Target:  5'- cGGGCACCGcgGgAGCCgaggaCGUCACgGg -3'
miRNA:   3'- -CCUGUGGC--UgUCGGagaa-GCAGUGgC- -5'
457 3' -54.9 AC_000013.1 + 10082 0.67 0.664419
Target:  5'- cGGucGCACCGACAcGCCUgCggaaagacgUCG-CGCCGu -3'
miRNA:   3'- -CC--UGUGGCUGU-CGGA-Ga--------AGCaGUGGC- -5'
457 3' -54.9 AC_000013.1 + 4219 0.67 0.664419
Target:  5'- gGGACAgCGACAaCCUCggUGaCACCu -3'
miRNA:   3'- -CCUGUgGCUGUcGGAGaaGCaGUGGc -5'
457 3' -54.9 AC_000013.1 + 14497 0.67 0.642345
Target:  5'- cGGACggGCCGACGGCgCg-UUCGcuuUCGCCa -3'
miRNA:   3'- -CCUG--UGGCUGUCG-GagAAGC---AGUGGc -5'
457 3' -54.9 AC_000013.1 + 7081 0.68 0.609188
Target:  5'- ---gGCCGACAGCCcgucaUCggCGUCAUCu -3'
miRNA:   3'- ccugUGGCUGUCGG-----AGaaGCAGUGGc -5'
457 3' -54.9 AC_000013.1 + 13110 0.68 0.598163
Target:  5'- uGGuACACCccaACAGCgUCUuucUCGUCAgCCGa -3'
miRNA:   3'- -CC-UGUGGc--UGUCGgAGA---AGCAGU-GGC- -5'
457 3' -54.9 AC_000013.1 + 13265 0.68 0.575115
Target:  5'- cGGGCGCCGGCGGggaaggaCCacacCGUCACCa -3'
miRNA:   3'- -CCUGUGGCUGUC-------GGagaaGCAGUGGc -5'
457 3' -54.9 AC_000013.1 + 1723 0.69 0.532922
Target:  5'- cGuCGCCGAUgcgggccaAGCCUCUUCcGaCACCGa -3'
miRNA:   3'- cCuGUGGCUG--------UCGGAGAAG-CaGUGGC- -5'
457 3' -54.9 AC_000013.1 + 13342 0.7 0.460338
Target:  5'- cGGCACCGACAGCagCUUCcgcaagcggCGCCGa -3'
miRNA:   3'- cCUGUGGCUGUCGgaGAAGca-------GUGGC- -5'
457 3' -54.9 AC_000013.1 + 8742 0.72 0.357995
Target:  5'- uGGACACCacgcGCAuCCUCUUCGaacaggaccUCACCGa -3'
miRNA:   3'- -CCUGUGGc---UGUcGGAGAAGC---------AGUGGC- -5'
457 3' -54.9 AC_000013.1 + 11844 0.73 0.309286
Target:  5'- aGACGCCGACguGGCg-C-UCGUCACCGa -3'
miRNA:   3'- cCUGUGGCUG--UCGgaGaAGCAGUGGC- -5'
457 3' -54.9 AC_000013.1 + 8119 1.11 0.000692
Target:  5'- gGGACACCGACAGCCUCUUCGUCACCGa -3'
miRNA:   3'- -CCUGUGGCUGUCGGAGAAGCAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.