miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
463 3' -58.2 AC_000013.1 + 38856 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 38991 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39125 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39260 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39395 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39530 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39665 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39800 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 39935 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 40070 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 40204 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 40339 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 40474 0.66 0.47427
Target:  5'- gCgCCCGUGCUGGgCGCCgGGuuaaugauuGACCGg -3'
miRNA:   3'- gGgGGGUACGACCaGUGGgUU---------CUGGU- -5'
463 3' -58.2 AC_000013.1 + 14710 0.69 0.337211
Target:  5'- gCCCCCAU-CUGGUCcggauaaauggcGCCCugcucGGCCAa -3'
miRNA:   3'- gGGGGGUAcGACCAG------------UGGGuu---CUGGU- -5'
463 3' -58.2 AC_000013.1 + 10854 1.1 0.000343
Target:  5'- uCCCCCCAUGCUGGUCACCCAAGACCAg -3'
miRNA:   3'- -GGGGGGUACGACCAGUGGGUUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.