miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
464 3' -55.8 AC_000013.1 + 12581 0.66 0.618362
Target:  5'- --gGUGGCU-UCGcGCAgCAGCGAGcGCg -3'
miRNA:   3'- uagCACCGGuAGU-CGUgGUUGCUC-CG- -5'
464 3' -55.8 AC_000013.1 + 8320 0.66 0.618362
Target:  5'- -gCGUGGUCAuccUCGGCuauaUAAgGGGGCg -3'
miRNA:   3'- uaGCACCGGU---AGUCGug--GUUgCUCCG- -5'
464 3' -55.8 AC_000013.1 + 2456 0.66 0.618362
Target:  5'- -gCGUGGCCuUguGuCGCCAGguguuuaGGGGCg -3'
miRNA:   3'- uaGCACCGGuAguC-GUGGUUg------CUCCG- -5'
464 3' -55.8 AC_000013.1 + 13643 0.66 0.607129
Target:  5'- gGUCGgggcaGGCgAUCAGCGuuAAcCGGGGUc -3'
miRNA:   3'- -UAGCa----CCGgUAGUCGUggUU-GCUCCG- -5'
464 3' -55.8 AC_000013.1 + 6998 0.66 0.59592
Target:  5'- cGUCG-GGCCGUagauGaCGCCGAUGAcgGGCu -3'
miRNA:   3'- -UAGCaCCGGUAgu--C-GUGGUUGCU--CCG- -5'
464 3' -55.8 AC_000013.1 + 14371 0.66 0.59592
Target:  5'- cGUCGgacgagGGagaAUcCAGCGgCGGCGAGGCg -3'
miRNA:   3'- -UAGCa-----CCgg-UA-GUCGUgGUUGCUCCG- -5'
464 3' -55.8 AC_000013.1 + 25469 0.67 0.555895
Target:  5'- -aCGUGGCCGaagcuuauggugcuuUCuuGGCGCuCGACccaGAGGCg -3'
miRNA:   3'- uaGCACCGGU---------------AG--UCGUG-GUUG---CUCCG- -5'
464 3' -55.8 AC_000013.1 + 13740 0.69 0.436066
Target:  5'- aGUCGUcGGCgGUCAGCACgCGACcccGGUu -3'
miRNA:   3'- -UAGCA-CCGgUAGUCGUG-GUUGcu-CCG- -5'
464 3' -55.8 AC_000013.1 + 12680 0.69 0.407032
Target:  5'- gGUCGUGGgCGUCGGgAagGACGGGGa -3'
miRNA:   3'- -UAGCACCgGUAGUCgUggUUGCUCCg -5'
464 3' -55.8 AC_000013.1 + 6742 0.7 0.388362
Target:  5'- -cCGcUGGCCAUCGuCAUgGACGAGuGCa -3'
miRNA:   3'- uaGC-ACCGGUAGUcGUGgUUGCUC-CG- -5'
464 3' -55.8 AC_000013.1 + 11388 1.09 0.000626
Target:  5'- cAUCGUGGCCAUCAGCACCAACGAGGCc -3'
miRNA:   3'- -UAGCACCGGUAGUCGUGGUUGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.