miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
466 3' -58.3 AC_000013.1 + 13495 0.66 0.498381
Target:  5'- uGCGGGCUgGCGGC---GGGAgCGGACGu -3'
miRNA:   3'- -CGCCCGA-UGCUGgguCCCU-GUCUGUu -5'
466 3' -58.3 AC_000013.1 + 7063 0.67 0.438058
Target:  5'- gGCGucauCUACGGCCCGacGGGAuCGGGCAAg -3'
miRNA:   3'- -CGCcc--GAUGCUGGGU--CCCU-GUCUGUU- -5'
466 3' -58.3 AC_000013.1 + 38932 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39067 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39201 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39336 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39471 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39606 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39741 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 39876 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 40011 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 40145 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 40280 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 40415 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 40550 0.7 0.264448
Target:  5'- cGCGGGUgcagugGCGGCCCucggccgccagGGGGagcuccGCAGACAc -3'
miRNA:   3'- -CGCCCGa-----UGCUGGG-----------UCCC------UGUCUGUu -5'
466 3' -58.3 AC_000013.1 + 18730 0.74 0.154768
Target:  5'- aGCGGcgcacccGCUACGG-CCAGGGACAuGACGAc -3'
miRNA:   3'- -CGCC-------CGAUGCUgGGUCCCUGU-CUGUU- -5'
466 3' -58.3 AC_000013.1 + 12187 1.08 0.000408
Target:  5'- cGCGGGCUACGACCCAGGGACAGACAAg -3'
miRNA:   3'- -CGCCCGAUGCUGGGUCCCUGUCUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.