miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
468 3' -53 AC_000013.1 + 16115 0.66 0.784239
Target:  5'- uCAGGCCCaacgCUAAuCCGCUa-GGUCugGCg -3'
miRNA:   3'- -GUUUGGG----GAUU-GGUGAagCCGGugCG- -5'
468 3' -53 AC_000013.1 + 4627 0.66 0.784239
Target:  5'- aGAGCCCCgu-CCACgcUCGcGCUACa- -3'
miRNA:   3'- gUUUGGGGauuGGUGa-AGC-CGGUGcg -5'
468 3' -53 AC_000013.1 + 18590 0.66 0.77396
Target:  5'- --cGCCCaCUAcggccuCCGCUgccgagCGaGCCGCGCu -3'
miRNA:   3'- guuUGGG-GAUu-----GGUGAa-----GC-CGGUGCG- -5'
468 3' -53 AC_000013.1 + 19922 0.66 0.763525
Target:  5'- uCGAuCCgCCgucggcuGCCGCUaUGGCCGCGUu -3'
miRNA:   3'- -GUUuGG-GGau-----UGGUGAaGCCGGUGCG- -5'
468 3' -53 AC_000013.1 + 2223 0.67 0.720481
Target:  5'- -cGAUCCCgcucucgugGGCUcgauguugcugGCUUgGGCCGCGCg -3'
miRNA:   3'- guUUGGGGa--------UUGG-----------UGAAgCCGGUGCG- -5'
468 3' -53 AC_000013.1 + 22906 0.68 0.664674
Target:  5'- -cGAUCCC-AACCGCccugccUCGGCCAuCGUg -3'
miRNA:   3'- guUUGGGGaUUGGUGa-----AGCCGGU-GCG- -5'
468 3' -53 AC_000013.1 + 18078 0.68 0.662415
Target:  5'- aCGAAUCCCgaccCCACgcauagacgagCGGCgACGCa -3'
miRNA:   3'- -GUUUGGGGauu-GGUGaa---------GCCGgUGCG- -5'
468 3' -53 AC_000013.1 + 16121 0.68 0.653368
Target:  5'- uCAGGCUCCggauUGGCUagaaggGCUUUGGCgACGCg -3'
miRNA:   3'- -GUUUGGGG----AUUGG------UGAAGCCGgUGCG- -5'
468 3' -53 AC_000013.1 + 15488 0.68 0.642041
Target:  5'- aAAGCUUCaaAACUACcugUUGGCCGCGCa -3'
miRNA:   3'- gUUUGGGGa-UUGGUGa--AGCCGGUGCG- -5'
468 3' -53 AC_000013.1 + 16445 0.69 0.61937
Target:  5'- -uGAUUCC--GCCACUagacUCGGCCGCGg -3'
miRNA:   3'- guUUGGGGauUGGUGA----AGCCGGUGCg -5'
468 3' -53 AC_000013.1 + 7527 0.69 0.608047
Target:  5'- aGAACCUCUAGCCccccucagGCUgcucgCGGCgGCGg -3'
miRNA:   3'- gUUUGGGGAUUGG--------UGAa----GCCGgUGCg -5'
468 3' -53 AC_000013.1 + 42314 0.69 0.596747
Target:  5'- -uAACCCUU-ACCgagaauGCUUCGGUgGCGCc -3'
miRNA:   3'- guUUGGGGAuUGG------UGAAGCCGgUGCG- -5'
468 3' -53 AC_000013.1 + 38719 0.7 0.57425
Target:  5'- ---cCCCCUGGCgGCcgUUGGCCGCcacuGCa -3'
miRNA:   3'- guuuGGGGAUUGgUGa-AGCCGGUG----CG- -5'
468 3' -53 AC_000013.1 + 18690 0.7 0.563073
Target:  5'- --cGCCCCUGcggccuccgagGCCGCccUGGCCGCuGCu -3'
miRNA:   3'- guuUGGGGAU-----------UGGUGaaGCCGGUG-CG- -5'
468 3' -53 AC_000013.1 + 30101 0.7 0.540904
Target:  5'- -cAACCCCUAACCc---CGGUUACGUc -3'
miRNA:   3'- guUUGGGGAUUGGugaaGCCGGUGCG- -5'
468 3' -53 AC_000013.1 + 17383 0.71 0.508231
Target:  5'- aCAAccguCCCgUGACCGCUuaUCGGuCUugGCu -3'
miRNA:   3'- -GUUu---GGGgAUUGGUGA--AGCC-GGugCG- -5'
468 3' -53 AC_000013.1 + 2349 0.71 0.496459
Target:  5'- gCGcuCCCCUAAUCcaaacgguauugcGCUUCGacuGCCGCGCg -3'
miRNA:   3'- -GUuuGGGGAUUGG-------------UGAAGC---CGGUGCG- -5'
468 3' -53 AC_000013.1 + 2532 0.72 0.425735
Target:  5'- --cGCCCCUAaacACCugGCgacacaaGGCCACGCa -3'
miRNA:   3'- guuUGGGGAU---UGG--UGaag----CCGGUGCG- -5'
468 3' -53 AC_000013.1 + 25559 0.73 0.391293
Target:  5'- --cGCCUCUGggucgagcGCCaagaaagcaccauaaGCUUCGGCCACGUa -3'
miRNA:   3'- guuUGGGGAU--------UGG---------------UGAAGCCGGUGCG- -5'
468 3' -53 AC_000013.1 + 11319 0.73 0.378398
Target:  5'- gGAACUCCUcgUCGC-UCGGCaCGCGCc -3'
miRNA:   3'- gUUUGGGGAuuGGUGaAGCCG-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.