miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
468 5' -53.5 AC_000013.1 + 10372 0.66 0.770378
Target:  5'- gGcGCGGAACC---GCCGg--GCAACg -3'
miRNA:   3'- gC-CGCCUUGGuagCGGCaaaCGUUGa -5'
468 5' -53.5 AC_000013.1 + 28868 0.66 0.759923
Target:  5'- gCGGUGGAACCGgcucuUCGUCGaUUaCGGCa -3'
miRNA:   3'- -GCCGCCUUGGU-----AGCGGCaAAcGUUGa -5'
468 5' -53.5 AC_000013.1 + 18578 0.66 0.72778
Target:  5'- uGGCGGuACCGUCGCCcacuaCGGCc -3'
miRNA:   3'- gCCGCCuUGGUAGCGGcaaacGUUGa -5'
468 5' -53.5 AC_000013.1 + 16488 0.67 0.683569
Target:  5'- cCGGaGGGuauccgugcACCGUCGCCGg--GUAGCg -3'
miRNA:   3'- -GCCgCCU---------UGGUAGCGGCaaaCGUUGa -5'
468 5' -53.5 AC_000013.1 + 13469 0.68 0.661104
Target:  5'- gCGGCGaGGACCuagGUCcucCCGUUUGCGgGCUg -3'
miRNA:   3'- -GCCGC-CUUGG---UAGc--GGCAAACGU-UGA- -5'
468 5' -53.5 AC_000013.1 + 18842 0.68 0.627221
Target:  5'- gCGGCGGuagAACgCGUCGCCGgggaaaaCAGCUg -3'
miRNA:   3'- -GCCGCC---UUG-GUAGCGGCaaac---GUUGA- -5'
468 5' -53.5 AC_000013.1 + 23755 0.68 0.601255
Target:  5'- aGGUGGGACCAUCcguGCCcgagggagauugcgGaUUGCAGCa -3'
miRNA:   3'- gCCGCCUUGGUAG---CGG--------------CaAACGUUGa -5'
468 5' -53.5 AC_000013.1 + 10728 0.69 0.548774
Target:  5'- aGGCGGGACagguUUGCaCGgccgUGCGGCUg -3'
miRNA:   3'- gCCGCCUUGgu--AGCG-GCaa--ACGUUGA- -5'
468 5' -53.5 AC_000013.1 + 12230 0.72 0.385353
Target:  5'- gGGCGGcGCCAUCGUCcuccGCAACa -3'
miRNA:   3'- gCCGCCuUGGUAGCGGcaaaCGUUGa -5'
468 5' -53.5 AC_000013.1 + 10431 0.73 0.36726
Target:  5'- cCGGCGGuuccgcgccuACCgGUC-CCGUUUGCAACa -3'
miRNA:   3'- -GCCGCCu---------UGG-UAGcGGCAAACGUUGa -5'
468 5' -53.5 AC_000013.1 + 14625 1.07 0.001553
Target:  5'- uCGGCGGAACCAUCGCCGUUUGCAACUu -3'
miRNA:   3'- -GCCGCCUUGGUAGCGGCAAACGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.