miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
469 3' -55.3 AC_000013.1 + 38910 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39045 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39179 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39314 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39449 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39584 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39719 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39854 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 39989 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 40123 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 40258 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 40393 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 40528 0.67 0.52099
Target:  5'- -gGCCGCCAGGgggagcUCCGC-AGACacgCAGu -3'
miRNA:   3'- agCGGCGGUCU------AGGCGaUCUGa--GUUu -5'
469 3' -55.3 AC_000013.1 + 30875 0.74 0.221581
Target:  5'- aCGCCGCCGGAcguUCCGCUGucCUUGAc -3'
miRNA:   3'- aGCGGCGGUCU---AGGCGAUcuGAGUUu -5'
469 3' -55.3 AC_000013.1 + 15918 1.07 0.000893
Target:  5'- aUCGCCGCCAGAUCCGCUAGACUCAAAg -3'
miRNA:   3'- -AGCGGCGGUCUAGGCGAUCUGAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.