Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
470 | 3' | -58.6 | AC_000013.1 | + | 2413 | 0.68 | 0.37498 |
Target: 5'- aCGCaCGUCaucaaCGGGCAGCAGUAa-GCGa -3' miRNA: 3'- gGCGcGUAG-----GCCCGUCGUCAUggUGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 7985 | 0.69 | 0.349585 |
Target: 5'- gCCGUGUGUgCGGGCccuugauGCGGUGCgCGCc -3' miRNA: 3'- -GGCGCGUAgGCCCGu------CGUCAUG-GUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 13506 | 0.67 | 0.417199 |
Target: 5'- aCGCGaagcCGUCCgcggaagcggacgaGGGCAGCGcGUGCUGCGc -3' miRNA: 3'- gGCGC----GUAGG--------------CCCGUCGU-CAUGGUGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 13749 | 0.66 | 0.515816 |
Target: 5'- gCGCGCggCCGagcuugaaacgcccGGCcgAGCAG-ACCGCGu -3' miRNA: 3'- gGCGCGuaGGC--------------CCG--UCGUCaUGGUGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 16478 | 0.68 | 0.401594 |
Target: 5'- uCCGUGCAccgucgCCGGGUAGCguugaGGaGCCAUc -3' miRNA: 3'- -GGCGCGUa-----GGCCCGUCG-----UCaUGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 16823 | 0.67 | 0.410728 |
Target: 5'- aCCGCG-AUCCGGuGCcuccaggcacGGCAGcucCCACGa -3' miRNA: 3'- -GGCGCgUAGGCC-CG----------UCGUCau-GGUGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 17193 | 1.1 | 0.00033 |
Target: 5'- aCCGCGCAUCCGGGCAGCAGUACCACGu -3' miRNA: 3'- -GGCGCGUAGGCCCGUCGUCAUGGUGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 19656 | 0.67 | 0.448518 |
Target: 5'- cCCGUGaCGUCCucGGCucccGCGGUGCC-CGa -3' miRNA: 3'- -GGCGC-GUAGGc-CCGu---CGUCAUGGuGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 19971 | 0.67 | 0.419991 |
Target: 5'- aCCGCGaccCCGcGGCuGCAGUACuuuCACa -3' miRNA: 3'- -GGCGCguaGGC-CCGuCGUCAUG---GUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 25349 | 0.69 | 0.310041 |
Target: 5'- aCCGUGauggCgGaGGCAGCAG-ACCGCGa -3' miRNA: 3'- -GGCGCgua-GgC-CCGUCGUCaUGGUGC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 34203 | 0.67 | 0.448518 |
Target: 5'- aCGCGUAUCgcgguugugaCGGGCGGUGuaGCCGCu -3' miRNA: 3'- gGCGCGUAG----------GCCCGUCGUcaUGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 38820 | 0.68 | 0.357912 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcgGCCAaCGg -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA----UGGU-GC- -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 38955 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39089 | 0.68 | 0.401594 |
Target: 5'- cCCGCGCcagagacaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG---------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39224 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39359 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39494 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39629 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39764 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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470 | 3' | -58.6 | AC_000013.1 | + | 39899 | 0.67 | 0.410728 |
Target: 5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3' miRNA: 3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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