miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
472 5' -56.1 AC_000013.1 + 21875 0.66 0.574918
Target:  5'- -gCGCGUAcAUGGGaGgGGAUGAGGGg -3'
miRNA:   3'- aaGCGUAU-UGCCCgCgCCUGCUCUCg -5'
472 5' -56.1 AC_000013.1 + 13256 0.67 0.531296
Target:  5'- -aCGCGagcGCGGGCGCcGGCGGGGa- -3'
miRNA:   3'- aaGCGUau-UGCCCGCGcCUGCUCUcg -5'
472 5' -56.1 AC_000013.1 + 5105 0.68 0.48893
Target:  5'- gUUCGgAU--CGGGUGUGGGCG-GAGUu -3'
miRNA:   3'- -AAGCgUAuuGCCCGCGCCUGCuCUCG- -5'
472 5' -56.1 AC_000013.1 + 7279 0.68 0.458221
Target:  5'- -aCGgGUAACGGGC-UGGuACGAagGAGCg -3'
miRNA:   3'- aaGCgUAUUGCCCGcGCC-UGCU--CUCG- -5'
472 5' -56.1 AC_000013.1 + 3074 0.68 0.458221
Target:  5'- aUCGUcgu-CGGGgGCGGugGAGAu- -3'
miRNA:   3'- aAGCGuauuGCCCgCGCCugCUCUcg -5'
472 5' -56.1 AC_000013.1 + 8308 0.68 0.457215
Target:  5'- gUgGCGUAAUGGGCGUGGucauCcucggcuauauaaGGGGGCg -3'
miRNA:   3'- aAgCGUAUUGCCCGCGCCu---G-------------CUCUCG- -5'
472 5' -56.1 AC_000013.1 + 6529 0.69 0.438331
Target:  5'- uUUCcUAUGGCGGuGCGCGGcGCGAGAu- -3'
miRNA:   3'- -AAGcGUAUUGCC-CGCGCC-UGCUCUcg -5'
472 5' -56.1 AC_000013.1 + 4556 0.69 0.418944
Target:  5'- --aGUGUAGCGcGaGCGUGGACG-GGGCu -3'
miRNA:   3'- aagCGUAUUGC-C-CGCGCCUGCuCUCG- -5'
472 5' -56.1 AC_000013.1 + 516 0.7 0.372839
Target:  5'- aUCGUuuuAUGGCGGGCucCGGGCGuauaacaguGGAGCg -3'
miRNA:   3'- aAGCG---UAUUGCCCGc-GCCUGC---------UCUCG- -5'
472 5' -56.1 AC_000013.1 + 13498 0.72 0.298932
Target:  5'- -cCGUcc-GCGGaaGCGGACGAGGGCa -3'
miRNA:   3'- aaGCGuauUGCCcgCGCCUGCUCUCG- -5'
472 5' -56.1 AC_000013.1 + 13490 0.72 0.28413
Target:  5'- -cCGUuu-GCGGGCugGCGG-CGGGAGCg -3'
miRNA:   3'- aaGCGuauUGCCCG--CGCCuGCUCUCG- -5'
472 5' -56.1 AC_000013.1 + 23587 1.1 0.000525
Target:  5'- gUUCGCAUAACGGGCGCGGACGAGAGCa -3'
miRNA:   3'- -AAGCGUAUUGCCCGCGCCUGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.