miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
477 3' -60.6 AC_000013.1 + 38921 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39056 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39190 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39325 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39460 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39595 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39730 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 39865 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 40000 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 40134 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 40269 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 40404 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 40539 0.67 0.316167
Target:  5'- uGGCgGCCCUCggcCGccaGGggGAGCUCCGc -3'
miRNA:   3'- -CCG-CGGGGGa--GCa--CCuaCUCGAGGUa -5'
477 3' -60.6 AC_000013.1 + 25565 0.69 0.240135
Target:  5'- uGGUGCCgCCUC-UGGGUcGAGCgCCAa -3'
miRNA:   3'- -CCGCGGgGGAGcACCUA-CUCGaGGUa -5'
477 3' -60.6 AC_000013.1 + 11298 0.7 0.194925
Target:  5'- cGCGCCUCCUCGcaUGcGAUGAGcCUCUc- -3'
miRNA:   3'- cCGCGGGGGAGC--AC-CUACUC-GAGGua -5'
477 3' -60.6 AC_000013.1 + 37964 1.06 0.000326
Target:  5'- uGGCGCCCCCUCGUGGAUGAGCUCCAUu -3'
miRNA:   3'- -CCGCGGGGGAGCACCUACUCGAGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.