Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
477 | 5' | -56.6 | AC_000013.1 | + | 8066 | 0.66 | 0.601476 |
Target: 5'- ---cGGUGUCC-CCguagagggUC-UGGGGGUCCc -3' miRNA: 3'- ucuaCCACGGGuGG--------AGuAUCCCCAGG- -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 23813 | 0.66 | 0.557577 |
Target: 5'- cGGAUGGU-CCCACCUCucgcuccGGUCg -3' miRNA: 3'- -UCUACCAcGGGUGGAGuaucc--CCAGg -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 25569 | 0.71 | 0.310948 |
Target: 5'- uAGGUGGUG-CCGCCUCu---GGGUCg -3' miRNA: 3'- -UCUACCACgGGUGGAGuaucCCCAGg -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 37717 | 0.67 | 0.493672 |
Target: 5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA: 3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 37750 | 0.67 | 0.493672 |
Target: 5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA: 3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 37783 | 0.67 | 0.493672 |
Target: 5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA: 3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 37816 | 0.67 | 0.493672 |
Target: 5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA: 3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5' |
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477 | 5' | -56.6 | AC_000013.1 | + | 37927 | 1.11 | 0.00041 |
Target: 5'- gAGAUGGUGCCCACCUCAUAGGGGUCCc -3' miRNA: 3'- -UCUACCACGGGUGGAGUAUCCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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