Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 480 | 3' | -57.8 | AC_000013.1 | + | 13829 | 0.66 | 0.51346 |
|
Target: 5'- uGCguacgGCGUUGAccCGUCCCGagcugCCCGCg -3' miRNA: 3'- cCGaga--CGCAACU--GCAGGGUg----GGGUG- -5' |
|||||||
| 480 | 3' | -57.8 | AC_000013.1 | + | 43561 | 0.67 | 0.486608 |
|
Target: 5'- cGGaCUCUGCuUUGGCGcUCCCcgggacccggagcugGCUCUACg -3' miRNA: 3'- -CC-GAGACGcAACUGC-AGGG---------------UGGGGUG- -5' |
|||||||
| 480 | 3' | -57.8 | AC_000013.1 | + | 10096 | 0.67 | 0.482535 |
|
Target: 5'- cGC-CUGCGgaaaGACGUCgCGCCguuCCACg -3' miRNA: 3'- cCGaGACGCaa--CUGCAGgGUGG---GGUG- -5' |
|||||||
| 480 | 3' | -57.8 | AC_000013.1 | + | 11717 | 0.7 | 0.31973 |
|
Target: 5'- cGGCgguaCGUaGACGUCaCCACCCUGCa -3' miRNA: 3'- -CCGagacGCAaCUGCAG-GGUGGGGUG- -5' |
|||||||
| 480 | 3' | -57.8 | AC_000013.1 | + | 18665 | 0.73 | 0.201723 |
|
Target: 5'- cGGCUUgGCGUUcGGCGaaCUACCCCGCc -3' miRNA: 3'- -CCGAGaCGCAA-CUGCagGGUGGGGUG- -5' |
|||||||
| 480 | 3' | -57.8 | AC_000013.1 | + | 11608 | 1.12 | 0.000267 |
|
Target: 5'- aGGCUCUGCGUUGACGUCCCACCCCACg -3' miRNA: 3'- -CCGAGACGCAACUGCAGGGUGGGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home