Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
480 | 5' | -53.6 | AC_000013.1 | + | 13379 | 0.66 | 0.757933 |
Target: 5'- uUGCu-GGUGGUGGCGUUgcACGUguuGCUg -3' miRNA: 3'- gACGucCCACCACUGCAGa-UGCA---UGG- -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 9150 | 0.66 | 0.747399 |
Target: 5'- -gGCauGGGGUGGgugagGGCGgagGCGUACa -3' miRNA: 3'- gaCG--UCCCACCa----CUGCagaUGCAUGg -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 4374 | 0.67 | 0.727061 |
Target: 5'- uCUGCGGGGguuguggcagacgggGGUGAgcUCUugGggaGCCg -3' miRNA: 3'- -GACGUCCCa--------------CCACUgcAGAugCa--UGG- -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 28033 | 0.67 | 0.715118 |
Target: 5'- gCUGcCAGGG-GGUG-CGUCUuuacCGU-CCg -3' miRNA: 3'- -GAC-GUCCCaCCACuGCAGAu---GCAuGG- -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 5616 | 0.7 | 0.520135 |
Target: 5'- aUGCAGGGgcggGaaguagaugaguuuaGUGACGUCUcgcacgggaACGUACUg -3' miRNA: 3'- gACGUCCCa---C---------------CACUGCAGA---------UGCAUGG- -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 11679 | 0.72 | 0.433546 |
Target: 5'- -cGUGGGGUGG-GACGUCaACGcagaGCCu -3' miRNA: 3'- gaCGUCCCACCaCUGCAGaUGCa---UGG- -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 18173 | 0.72 | 0.423796 |
Target: 5'- -aGCGGGGcGGgaacGGCGUCUGCuggACCg -3' miRNA: 3'- gaCGUCCCaCCa---CUGCAGAUGca-UGG- -5' |
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480 | 5' | -53.6 | AC_000013.1 | + | 11643 | 1.13 | 0.000653 |
Target: 5'- cCUGCAGGGUGGUGACGUCUACGUACCg -3' miRNA: 3'- -GACGUCCCACCACUGCAGAUGCAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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