Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
481 | 5' | -55.7 | AC_000013.1 | + | 1441 | 0.67 | 0.532717 |
Target: 5'- aGCgGCCGCCAGUugAACGGCGAaaucCACu -3' miRNA: 3'- -CGgUGGUGGUCG--UUGUCGUUgcc-GUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 2523 | 0.69 | 0.428737 |
Target: 5'- -aCACCuggcgacacaagGCCAcGCAGCGGU-GCGGCACg -3' miRNA: 3'- cgGUGG------------UGGU-CGUUGUCGuUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 7444 | 0.69 | 0.40939 |
Target: 5'- cGCCGCCGCC-GCgAGCAGCcugAGgGGgGCu -3' miRNA: 3'- -CGGUGGUGGuCG-UUGUCG---UUgCCgUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 7518 | 0.71 | 0.305446 |
Target: 5'- aGCCccccucagGCUGCUcGCGGCGGCGGCGGcCGCa -3' miRNA: 3'- -CGG--------UGGUGGuCGUUGUCGUUGCC-GUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 7803 | 0.67 | 0.540367 |
Target: 5'- -aCGCUGCUGGCAGaGGCAcgaagaccagucguACGGCGCg -3' miRNA: 3'- cgGUGGUGGUCGUUgUCGU--------------UGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 10186 | 0.66 | 0.610532 |
Target: 5'- uGCuCGCCACCG--AACucguGgAACGGCGCg -3' miRNA: 3'- -CG-GUGGUGGUcgUUGu---CgUUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 11023 | 0.67 | 0.511084 |
Target: 5'- -aCACgGCCGGUuGCAGacggAACGGUACg -3' miRNA: 3'- cgGUGgUGGUCGuUGUCg---UUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 12183 | 0.66 | 0.599282 |
Target: 5'- gGCUACgAcCCAGgGACAGaCAAgGGCGa -3' miRNA: 3'- -CGGUGgU-GGUCgUUGUC-GUUgCCGUg -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 12209 | 0.67 | 0.511084 |
Target: 5'- cGCCACCGCCGGC-GC-GCccCGcGUACc -3' miRNA: 3'- -CGGUGGUGGUCGuUGuCGuuGC-CGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 12270 | 0.67 | 0.543657 |
Target: 5'- gGCgCGCCGgCGGUGGCGGgGACGGagGCg -3' miRNA: 3'- -CG-GUGGUgGUCGUUGUCgUUGCCg-UG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 12566 | 0.77 | 0.1241 |
Target: 5'- cGCCGCUACCcgagagguGGCuucgcGCAGCAGCGaGCGCg -3' miRNA: 3'- -CGGUGGUGG--------UCGu----UGUCGUUGC-CGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 12631 | 0.68 | 0.489824 |
Target: 5'- aGCCACCucuCgGGUAGCGGC-GCGGgAg -3' miRNA: 3'- -CGGUGGu--GgUCGUUGUCGuUGCCgUg -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 13289 | 0.71 | 0.313284 |
Target: 5'- aCCGUCACCAGCAucaGCAGCAacACGuGCAa -3' miRNA: 3'- cGGUGGUGGUCGU---UGUCGU--UGC-CGUg -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 13321 | 1.11 | 0.000428 |
Target: 5'- cGCCACCACCAGCAACAGCAACGGCACc -3' miRNA: 3'- -CGGUGGUGGUCGUUGUCGUUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 13810 | 0.66 | 0.599282 |
Target: 5'- aGCUGCCACCAaacGCGuuuGCGuACGGCGu -3' miRNA: 3'- -CGGUGGUGGU---CGUuguCGU-UGCCGUg -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 16449 | 0.66 | 0.621802 |
Target: 5'- uCCGCCACUAGacuCGGCcGCGG-ACg -3' miRNA: 3'- cGGUGGUGGUCguuGUCGuUGCCgUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 18451 | 0.7 | 0.363486 |
Target: 5'- -aCGCUuCCuGCGuaguACAGCGACGGUACa -3' miRNA: 3'- cgGUGGuGGuCGU----UGUCGUUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 18668 | 0.71 | 0.336871 |
Target: 5'- cGCgGCuCGCuCGGCAGCggaggccguagugGGCGACGGUACc -3' miRNA: 3'- -CGgUG-GUG-GUCGUUG-------------UCGUUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 18708 | 0.71 | 0.305446 |
Target: 5'- gGCCGCC-CUGGCcGCuGCucaaAGCGGCGCa -3' miRNA: 3'- -CGGUGGuGGUCGuUGuCG----UUGCCGUG- -5' |
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481 | 5' | -55.7 | AC_000013.1 | + | 18780 | 0.7 | 0.390597 |
Target: 5'- cGCCGCUuUgAGCAGCGGCcagGGCGGCc- -3' miRNA: 3'- -CGGUGGuGgUCGUUGUCG---UUGCCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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