miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
482 5' -54.4 AC_000013.1 + 20233 0.66 0.752319
Target:  5'- gGGCGUGuCGUCGGUC--UgCGuCGGGUa -3'
miRNA:   3'- -CUGCAU-GCAGCUAGuaGgGCuGCCCG- -5'
482 5' -54.4 AC_000013.1 + 28327 0.66 0.720668
Target:  5'- ----aGCGUCGGUCucuUCCgaCGGCGGGg -3'
miRNA:   3'- cugcaUGCAGCUAGu--AGG--GCUGCCCg -5'
482 5' -54.4 AC_000013.1 + 32332 0.66 0.720668
Target:  5'- gGGgGUGUGUUG-UCAgCCCGACGGGa -3'
miRNA:   3'- -CUgCAUGCAGCuAGUaGGGCUGCCCg -5'
482 5' -54.4 AC_000013.1 + 13829 0.66 0.720668
Target:  5'- uGCGUacgGCGUUGAccCGUCCCGagcugcccGCGGGg -3'
miRNA:   3'- cUGCA---UGCAGCUa-GUAGGGC--------UGCCCg -5'
482 5' -54.4 AC_000013.1 + 2360 0.67 0.714232
Target:  5'- uGACGUGCGUCGAUUggcgcaacaagcagaAUCCUuuugaGAagGGGUu -3'
miRNA:   3'- -CUGCAUGCAGCUAG---------------UAGGG-----CUg-CCCG- -5'
482 5' -54.4 AC_000013.1 + 13464 0.67 0.68822
Target:  5'- cGACGgcgGCGaggaccuaGGUCcUCCCGuuuGCGGGCu -3'
miRNA:   3'- -CUGCa--UGCag------CUAGuAGGGC---UGCCCG- -5'
482 5' -54.4 AC_000013.1 + 505 0.67 0.677281
Target:  5'- cGCGuUACGU-GAUCGUUUuaUGGCGGGCu -3'
miRNA:   3'- cUGC-AUGCAgCUAGUAGG--GCUGCCCG- -5'
482 5' -54.4 AC_000013.1 + 6772 0.67 0.666298
Target:  5'- aACGUauACGUCaacgCGUCCCGGCaGGGa -3'
miRNA:   3'- cUGCA--UGCAGcua-GUAGGGCUG-CCCg -5'
482 5' -54.4 AC_000013.1 + 8309 0.68 0.655283
Target:  5'- uGGCGUaauggGCGU-GGUCAUCCuCGGCuauauaaggGGGCg -3'
miRNA:   3'- -CUGCA-----UGCAgCUAGUAGG-GCUG---------CCCG- -5'
482 5' -54.4 AC_000013.1 + 3697 0.69 0.545567
Target:  5'- uGACGc-CGUCGAUgAUUUCGAUGGGa -3'
miRNA:   3'- -CUGCauGCAGCUAgUAGGGCUGCCCg -5'
482 5' -54.4 AC_000013.1 + 3052 0.7 0.534837
Target:  5'- gGAUGUA-GUCGAgUCGUCCCGuaucgucgucGgGGGCg -3'
miRNA:   3'- -CUGCAUgCAGCU-AGUAGGGC----------UgCCCG- -5'
482 5' -54.4 AC_000013.1 + 21070 0.7 0.534837
Target:  5'- aACGUACG-CGuUCucUCCCGA-GGGCa -3'
miRNA:   3'- cUGCAUGCaGCuAGu-AGGGCUgCCCG- -5'
482 5' -54.4 AC_000013.1 + 13947 0.72 0.412654
Target:  5'- cGACGUACGUCugcacgaaGUCGuacagguaguagaUCCCcGCGGGCa -3'
miRNA:   3'- -CUGCAUGCAGc-------UAGU-------------AGGGcUGCCCG- -5'
482 5' -54.4 AC_000013.1 + 13892 1.13 0.000678
Target:  5'- aGACGUACGUCGAUCAUCCCGACGGGCg -3'
miRNA:   3'- -CUGCAUGCAGCUAGUAGGGCUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.