miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
484 3' -61.9 AC_000013.1 + 16800 0.66 0.343424
Target:  5'- uCACGGCGGUUUUCAauuccccGCCCC-AGCa -3'
miRNA:   3'- -GUGCCGUCGAGGGUgcu----CGGGGcUCG- -5'
484 3' -61.9 AC_000013.1 + 10431 0.66 0.33546
Target:  5'- -cCGGCGGUUCCgCGCcuaccGGUCCCGuuuGCa -3'
miRNA:   3'- guGCCGUCGAGG-GUGc----UCGGGGCu--CG- -5'
484 3' -61.9 AC_000013.1 + 1038 0.66 0.327632
Target:  5'- -uCGGCGGCaccaCCACGucCgCCGAGCu -3'
miRNA:   3'- guGCCGUCGag--GGUGCucGgGGCUCG- -5'
484 3' -61.9 AC_000013.1 + 18776 0.66 0.31994
Target:  5'- cUACGGCGGUUCCCGuuuCaGGUgCCGGGa -3'
miRNA:   3'- -GUGCCGUCGAGGGU---GcUCGgGGCUCg -5'
484 3' -61.9 AC_000013.1 + 13349 0.67 0.283521
Target:  5'- gACaGCAGCUUCCGCaagcGGCgCCGAcGCg -3'
miRNA:   3'- gUGcCGUCGAGGGUGc---UCGgGGCU-CG- -5'
484 3' -61.9 AC_000013.1 + 7964 0.68 0.226357
Target:  5'- uGCGGCGGCga-CACGuacAGCUCCGaAGCc -3'
miRNA:   3'- gUGCCGUCGaggGUGC---UCGGGGC-UCG- -5'
484 3' -61.9 AC_000013.1 + 43674 0.69 0.215059
Target:  5'- aGCGuGCGGUguuauUCCCGCcuGCCUCGAGUa -3'
miRNA:   3'- gUGC-CGUCG-----AGGGUGcuCGGGGCUCG- -5'
484 3' -61.9 AC_000013.1 + 43550 0.71 0.141074
Target:  5'- -uUGGC-GCUCCC-CGGGaCCCgGAGCu -3'
miRNA:   3'- guGCCGuCGAGGGuGCUC-GGGgCUCG- -5'
484 3' -61.9 AC_000013.1 + 28085 0.72 0.130094
Target:  5'- -cUGGCAGCUCCagguCGAGCCucgCCGAcGCu -3'
miRNA:   3'- guGCCGUCGAGGgu--GCUCGG---GGCU-CG- -5'
484 3' -61.9 AC_000013.1 + 7497 0.72 0.126613
Target:  5'- gGCGGCGGCggCCgCACGGaucGCuCCCGAGg -3'
miRNA:   3'- gUGCCGUCGa-GG-GUGCU---CG-GGGCUCg -5'
484 3' -61.9 AC_000013.1 + 16844 1.09 0.000169
Target:  5'- gCACGGCAGCUCCCACGAGCCCCGAGCc -3'
miRNA:   3'- -GUGCCGUCGAGGGUGCUCGGGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.