miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
486 3' -56.4 AC_000013.1 + 18147 0.66 0.641184
Target:  5'- aCCGaCCgCCGCUUCU-CCgucgGCUGCUgGa -3'
miRNA:   3'- gGGC-GG-GGCGAAGAuGG----UGAUGAgCg -5'
486 3' -56.4 AC_000013.1 + 37979 0.66 0.619242
Target:  5'- cCCCGCCCaacuCUUCaACUgcauuuCUAUUCGCu -3'
miRNA:   3'- -GGGCGGGgc--GAAGaUGGu-----GAUGAGCG- -5'
486 3' -56.4 AC_000013.1 + 14452 0.66 0.608283
Target:  5'- cUCCGCCUCGCc---GCCGCUGgauucuccCUCGUc -3'
miRNA:   3'- -GGGCGGGGCGaagaUGGUGAU--------GAGCG- -5'
486 3' -56.4 AC_000013.1 + 12989 0.66 0.597345
Target:  5'- gCCGCaccuCCUGCUcggCUACCAgUACaUGCa -3'
miRNA:   3'- gGGCG----GGGCGAa--GAUGGUgAUGaGCG- -5'
486 3' -56.4 AC_000013.1 + 13843 0.67 0.586436
Target:  5'- aCCCGUCCCGag-CUGCCcgcggggaucuACUACcUGUa -3'
miRNA:   3'- -GGGCGGGGCgaaGAUGG-----------UGAUGaGCG- -5'
486 3' -56.4 AC_000013.1 + 11499 0.67 0.575565
Target:  5'- aCUGCCCCGUgcgcUCUAUCAUcaUGagaaaaUCGCg -3'
miRNA:   3'- gGGCGGGGCGa---AGAUGGUG--AUg-----AGCG- -5'
486 3' -56.4 AC_000013.1 + 13328 0.67 0.56474
Target:  5'- uCCUuCCCCGCcggCgcCCGC-GCUCGCg -3'
miRNA:   3'- -GGGcGGGGCGaa-GauGGUGaUGAGCG- -5'
486 3' -56.4 AC_000013.1 + 12220 0.67 0.543261
Target:  5'- gCgCGCCCCGCguacccUCUGCCcgaggccagaguGCUAacgaaacauCUCGCc -3'
miRNA:   3'- -GgGCGGGGCGa-----AGAUGG------------UGAU---------GAGCG- -5'
486 3' -56.4 AC_000013.1 + 13612 0.67 0.543261
Target:  5'- aUCGCUCCGCggCgACCGCUuucccgcuUUCGCa -3'
miRNA:   3'- gGGCGGGGCGaaGaUGGUGAu-------GAGCG- -5'
486 3' -56.4 AC_000013.1 + 21210 0.67 0.543261
Target:  5'- gCCCGCCCCGUUUUgaugCACUuucACgucaGCa -3'
miRNA:   3'- -GGGCGGGGCGAAGaug-GUGA---UGag--CG- -5'
486 3' -56.4 AC_000013.1 + 19925 0.68 0.522057
Target:  5'- aUCCGCCgUCGg--CUGCCGCUAUggcCGCg -3'
miRNA:   3'- -GGGCGG-GGCgaaGAUGGUGAUGa--GCG- -5'
486 3' -56.4 AC_000013.1 + 10784 0.69 0.440966
Target:  5'- aCCUGUCCCGCcugCggacGCCACUGggUGCg -3'
miRNA:   3'- -GGGCGGGGCGaa-Ga---UGGUGAUgaGCG- -5'
486 3' -56.4 AC_000013.1 + 11771 0.69 0.421818
Target:  5'- gUCGCCUccaCGC-UCUACUAUcuuUACUCGCa -3'
miRNA:   3'- gGGCGGG---GCGaAGAUGGUG---AUGAGCG- -5'
486 3' -56.4 AC_000013.1 + 14549 0.7 0.416172
Target:  5'- gCCCGUCCgGCacgagcuuaaggcgUCcGCCACUucCUCGCg -3'
miRNA:   3'- -GGGCGGGgCGa-------------AGaUGGUGAu-GAGCG- -5'
486 3' -56.4 AC_000013.1 + 23925 0.7 0.412434
Target:  5'- aCCGacgauaUCGCUUCcgaUACCGCUcGCUCGCg -3'
miRNA:   3'- gGGCgg----GGCGAAG---AUGGUGA-UGAGCG- -5'
486 3' -56.4 AC_000013.1 + 29978 0.7 0.39406
Target:  5'- aCCCGUUcgCCGCcgUCgcUCGCUAUUCGCg -3'
miRNA:   3'- -GGGCGG--GGCGa-AGauGGUGAUGAGCG- -5'
486 3' -56.4 AC_000013.1 + 43655 0.73 0.274044
Target:  5'- gCCUGCCUCGaguacucgcacCUUCUACCugcuGCUGCUgGCu -3'
miRNA:   3'- -GGGCGGGGC-----------GAAGAUGG----UGAUGAgCG- -5'
486 3' -56.4 AC_000013.1 + 18687 0.74 0.209867
Target:  5'- cCCCGCCCCuGCggcCUccgaggccgcccugGCCGCUGCUCa- -3'
miRNA:   3'- -GGGCGGGG-CGaa-GA--------------UGGUGAUGAGcg -5'
486 3' -56.4 AC_000013.1 + 18118 1.14 0.000316
Target:  5'- uCCCGCCCCGCUUCUACCACUACUCGCg -3'
miRNA:   3'- -GGGCGGGGCGAAGAUGGUGAUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.