miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
489 5' -60.6 AC_000013.1 + 28012 1.12 0.000143
Target:  5'- gUCGGCGAGGCUCGACCUGGAGCUGCCa -3'
miRNA:   3'- -AGCCGCUCCGAGCUGGACCUCGACGG- -5'
489 5' -60.6 AC_000013.1 + 29589 0.7 0.219771
Target:  5'- gUCGGCGAGGCgccaGACCuccucgaUGGuGCggaacaGCCc -3'
miRNA:   3'- -AGCCGCUCCGag--CUGG-------ACCuCGa-----CGG- -5'
489 5' -60.6 AC_000013.1 + 12804 0.69 0.229589
Target:  5'- gUCGGUGAGGCaCGuccagaaaagccuCCUGGGucGCUGCg -3'
miRNA:   3'- -AGCCGCUCCGaGCu------------GGACCU--CGACGg -5'
489 5' -60.6 AC_000013.1 + 7878 0.68 0.269901
Target:  5'- -gGGCGAGGaaaaUGGCUUcGGAGCUGUa -3'
miRNA:   3'- agCCGCUCCga--GCUGGA-CCUCGACGg -5'
489 5' -60.6 AC_000013.1 + 18697 0.68 0.276692
Target:  5'- gCGGCcuccGAGGC-CGcCCUGGccGCUGCUc -3'
miRNA:   3'- aGCCG----CUCCGaGCuGGACCu-CGACGG- -5'
489 5' -60.6 AC_000013.1 + 39945 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 39810 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 39675 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 39540 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 39405 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 39270 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 40214 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 40349 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 40484 0.67 0.328061
Target:  5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 41465 0.67 0.320309
Target:  5'- aUGGUGGcGCUCGACUucaaUGGAuGCcGCCg -3'
miRNA:   3'- aGCCGCUcCGAGCUGG----ACCU-CGaCGG- -5'
489 5' -60.6 AC_000013.1 + 19590 0.69 0.23795
Target:  5'- gCGGCGAcuugGGCUUGcaacGCCUGGAucaaUGCCu -3'
miRNA:   3'- aGCCGCU----CCGAGC----UGGACCUcg--ACGG- -5'
489 5' -60.6 AC_000013.1 + 40079 0.69 0.231952
Target:  5'- cCGGCaGGGGCgccCGugCUGG-GC-GCCg -3'
miRNA:   3'- aGCCG-CUCCGa--GCugGACCuCGaCGG- -5'
489 5' -60.6 AC_000013.1 + 19659 0.7 0.203851
Target:  5'- gUCGGuCGAGGCacuUCGGCg-GGAGCcgaagGCCc -3'
miRNA:   3'- -AGCC-GCUCCG---AGCUGgaCCUCGa----CGG- -5'
489 5' -60.6 AC_000013.1 + 29583 0.72 0.160684
Target:  5'- uUCaGUGAGGC-CG-CCUGaGAGCUGCa -3'
miRNA:   3'- -AGcCGCUCCGaGCuGGAC-CUCGACGg -5'
489 5' -60.6 AC_000013.1 + 38936 0.66 0.376586
Target:  5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3'
miRNA:   3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.