Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
489 | 5' | -60.6 | AC_000013.1 | + | 40349 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40214 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39945 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39810 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39675 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 41465 | 0.67 | 0.320309 |
Target: 5'- aUGGUGGcGCUCGACUucaaUGGAuGCcGCCg -3' miRNA: 3'- aGCCGCUcCGAGCUGG----ACCU-CGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 18697 | 0.68 | 0.276692 |
Target: 5'- gCGGCcuccGAGGC-CGcCCUGGccGCUGCUc -3' miRNA: 3'- aGCCG----CUCCGaGCuGGACCu-CGACGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 7878 | 0.68 | 0.269901 |
Target: 5'- -gGGCGAGGaaaaUGGCUUcGGAGCUGUa -3' miRNA: 3'- agCCGCUCCga--GCUGGA-CCUCGACGg -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 19590 | 0.69 | 0.23795 |
Target: 5'- gCGGCGAcuugGGCUUGcaacGCCUGGAucaaUGCCu -3' miRNA: 3'- aGCCGCU----CCGAGC----UGGACCUcg--ACGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40079 | 0.69 | 0.231952 |
Target: 5'- cCGGCaGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG-CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 12804 | 0.69 | 0.229589 |
Target: 5'- gUCGGUGAGGCaCGuccagaaaagccuCCUGGGucGCUGCg -3' miRNA: 3'- -AGCCGCUCCGaGCu------------GGACCU--CGACGg -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 29589 | 0.7 | 0.219771 |
Target: 5'- gUCGGCGAGGCgccaGACCuccucgaUGGuGCggaacaGCCc -3' miRNA: 3'- -AGCCGCUCCGag--CUGG-------ACCuCGa-----CGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 19659 | 0.7 | 0.203851 |
Target: 5'- gUCGGuCGAGGCacuUCGGCg-GGAGCcgaagGCCc -3' miRNA: 3'- -AGCC-GCUCCG---AGCUGgaCCUCGa----CGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 29583 | 0.72 | 0.160684 |
Target: 5'- uUCaGUGAGGC-CG-CCUGaGAGCUGCa -3' miRNA: 3'- -AGcCGCUCCGaGCuGGAC-CUCGACGg -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 16916 | 0.75 | 0.092934 |
Target: 5'- -gGGCucGGGGCUCGug--GGAGCUGCCg -3' miRNA: 3'- agCCG--CUCCGAGCuggaCCUCGACGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 28012 | 1.12 | 0.000143 |
Target: 5'- gUCGGCGAGGCUCGACCUGGAGCUGCCa -3' miRNA: 3'- -AGCCGCUCCGAGCUGGACCUCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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